View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_low_14 (Length: 398)
Name: NF3999_low_14
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 13402574 - 13402964
Alignment:
| Q |
11 |
atcatcataacaaagaaatgaactcacagaaaatgaacgaaagagaagcaaaattatgaaaatcttttggagattgttattcaactcaattcatgatgaa |
110 |
Q |
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| T |
13402574 |
atcatcataacaaagaaatgaactcacagaaaatgaaagaaagagaagcaaaattatgaaaatcttttggagattgttattcaactcaattcatgatgaa |
13402673 |
T |
|
| Q |
111 |
gcacaatat----attcttacataggcgcaaattatgaaaactagctttcaactcaaattatgaacactacataaaatcacctaactgtttacatttttc |
206 |
Q |
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| T |
13402674 |
gcacaatatattaattcttacataggcgcaaattatgaaaactagctttcaactcaaattatgaacactacataaaatcacctaactgtttacatttttc |
13402773 |
T |
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| Q |
207 |
ttcc--------------aactaactgtagaccactgcgatgacttgcaacagaagcaaccacaagtaactctctcttcatc---attgtacttcaattg |
289 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13402774 |
ttccaactaacttcacggaactaactgtagatcactgcgatgacttgcaacagaagcaaccacaagtaactctctcttcatcattattgtacttcaattg |
13402873 |
T |
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| Q |
290 |
atacttcaacaatcacaaccaattattttgttcattcaaagtatcgaacattcaactgaatacagttgttggcaattttgaaatccaccct |
380 |
Q |
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| T |
13402874 |
atacttcaacaatcacaaccaattattttgttcattcaaagtatcgaacattcaactgaatacagttgttggcaattttgaaatccaccct |
13402964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 161 - 380
Target Start/End: Original strand, 13397152 - 13397384
Alignment:
| Q |
161 |
caaattatgaacactacataaaatcacctaactgtttacatttttcttccaac--------------taactgtagaccactgcgatgacttgcaacaga |
246 |
Q |
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| T |
13397152 |
caaattatgaacactacataaaatcacctaactgtttacatttttcttccaactaacttcaagcaactaactgtagatcactgcgatgacttgcaacaga |
13397251 |
T |
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| Q |
247 |
agcaaccacaagtaactctctcttcatcattgtacttcaattgatacttcaacaatcacaaccaattattttgttcattcaaagtatcgaacattcaact |
346 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13397252 |
agcaaccacaagtaactctctcatcattattgtacttcaattgatacttcaacaatcacaaccaattattttgttcattcaaa-tatcgaacattcaact |
13397350 |
T |
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| Q |
347 |
gaatacagttgttggcaattttgaaatccaccct |
380 |
Q |
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| T |
13397351 |
gaatacagttgttggcaattttgaaatccaccct |
13397384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 13397024 - 13397167
Alignment:
| Q |
11 |
atcatcataacaaagaaatgaactcacagaaaatgaacgaaagagaagcaaaattatgaaaatcttttggagattgttattcaactcaattcatgatgaa |
110 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13397024 |
atcatcataacaaataaatgaactcacagaaaatgaaagaaagagaagcaaaattatgaaaatcttttggagattgttattcaattcaattcatgatgaa |
13397123 |
T |
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| Q |
111 |
gcacaatat----attcttacataggcgcaaattatgaaaacta |
150 |
Q |
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||||||||| |||||||||||||||||||||||||| |||| |
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| T |
13397124 |
gcacaatatattaattcttacataggcgcaaattatgaacacta |
13397167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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