View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3999_low_16 (Length: 375)
Name: NF3999_low_16
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 13441361 - 13441700
Alignment:
| Q |
1 |
tatcagcagcaaccttatcaaatctttctttgatatgtttgatttgatgtgccattttaaggtgataaacaagaggattagaattcgagaagaaacattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
13441361 |
tatcagcagcaaccttatcaaatctttctttgatatgtttaatttgatgtgccattttaaggcgataaacaagaggattagaatccgagaagaaacattt |
13441460 |
T |
|
| Q |
101 |
taccttccttctgatgctacctgaagtgttgatgatttgctttcgtgaggcctcacattcaaaatcatcgattacatcttcggcatcgtagaagacccgc |
200 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13441461 |
tactttccttctgatgctacctgaagtgttgatgatttgcttttgtaaggcttcacattcaaaatcatcgattacatcttcggcatcgtagaagacccgc |
13441560 |
T |
|
| Q |
201 |
ttaatctgtttcagccattcacgtagttcattgttcttccattgcttttgttcagcgtccaacaacactgctttgacaggtgagacagtgtttttgattt |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
13441561 |
ttaatctgtttcagccattcacctagttcattgttctgccattgcctttgttcagcgtccaacaacactgctttgacgagtgagacagtgttttttattt |
13441660 |
T |
|
| Q |
301 |
cttgaagatcgtcgtagacaccgaacgctagagaagcttt |
340 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
13441661 |
cttgaagaacgtcgtagacaccaaacgctagagaagcttt |
13441700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 32784533 - 32784875
Alignment:
| Q |
1 |
tatcagcagcaaccttatcaaatctttctttgatatgtttgatttgatgtgccattttaaggtgataaacaagaggattagaattcgagaagaaacattt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||| |||||||||| ||| |
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|
| T |
32784533 |
tatcagcagcaaccttatcaaatctctctttgatatgtttgatttgatgcaccattttaaggcggtaaacaagaggattagaatttgagaagaaacgttt |
32784632 |
T |
|
| Q |
101 |
taccttccttctgatgctacctgaagtgttgatgatttgctttcgtgaggcctcacattcaaaatcatcgattacatcttcggcatcgtagaagacccgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
32784633 |
taccttccttctgatgctacctgaagtgttgatgatgtgctttcgcaaggcctcgcactcaaaatcatcgattacatcttcggcatcatagaagacccgc |
32784732 |
T |
|
| Q |
201 |
ttaatctgtttcagccattcacgtagttcattgttcttccattgcttttgttcagcgtccaacaacactgctttgacaggtgagacagtgtttttgattt |
300 |
Q |
| |
|
||||||||||||| ||||||||| || |||| ||||| ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
32784733 |
ttaatctgtttcaaccattcacgcagctcatggttctgccattgcgtttgttcagcgtccaacaacacggctttgatgagtgagacagtgtttttgattt |
32784832 |
T |
|
| Q |
301 |
cttgaagatcgtcgtagacaccgaacgctagagaagctttttc |
343 |
Q |
| |
|
||||||||| |||||||||||||| || ||||||||||||||| |
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|
| T |
32784833 |
cttgaagattgtcgtagacaccgagcgttagagaagctttttc |
32784875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 49351742 - 49351404
Alignment:
| Q |
1 |
tatcagcagcaaccttatcaaatctttctttgatatgtttgatttgatgtgccattttaaggtgataaacaagaggattagaattcgagaagaaacattt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| || | |||||||||||||||||||||| |||||||||||||| |
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|
| T |
49351742 |
tatcagcagcaaccttatcaaatctctctttgatatgtttgatttggtgtgccatttgaaagcgataaacaagaggattagaatttgagaagaaacattt |
49351643 |
T |
|
| Q |
101 |
taccttccttctgatgctacctgaagtgttgatgatttgctttcgtgaggcctcacattcaaaatcatcgattacatcttcggcatcgtagaagacccgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| || ||||||||||||||||||||||| ||| |
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|
| T |
49351642 |
taccttccttctgatgctacctgaagtgttgatgacgtgctttcgcaaggcctcacattcgaaatcatctataacatcttcggcatcgtagaagacgcgc |
49351543 |
T |
|
| Q |
201 |
ttaatctgtttcagccattcacgtagttcattgttcttccattgcttttgttcagcgtccaacaacactgctttgacaggtgagacagtgtttttgattt |
300 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| |
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|
| T |
49351542 |
ttaatctgtttcaaccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacagtttttttgattt |
49351443 |
T |
|
| Q |
301 |
cttgaagatcgtcgtagacaccgaacgctagagaagctt |
339 |
Q |
| |
|
|||||||||| | |||||| | || | ||||||||||| |
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|
| T |
49351442 |
cttgaagatccttgtagacgctgagggatagagaagctt |
49351404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 49340378 - 49340057
Alignment:
| Q |
1 |
tatcagcagcaaccttatcaaatctttctttgatatgtttgatttgatgtgccattttaaggtgataaacaagaggattagaattcgagaagaaacattt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||| |||||||||||||| |
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|
| T |
49340378 |
tatcagcagcaaacttatcaaatctttctttgatatgtttgatttgatgtgccatttgaaagcgataaacaagaggattagaatttgagaagaaacattt |
49340279 |
T |
|
| Q |
101 |
taccttccttctgatgctacctgaagtgttgatgatttgctttcgtgaggcctcacattcaaaatcatcgattacatcttcggcatcgtagaagacccgc |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||| |||||||| || |||||||||||||||||||| || || |
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|
| T |
49340278 |
taccttccttctgatgctaccagaagtgttgatgacgtgctttcgcaaggcctcacattcgaaatcatctataacatcttcggcatcgtagaaaacacgg |
49340179 |
T |
|
| Q |
201 |
ttaatctgtttcagccattcacgtagttcattgttcttccattgcttttgttcagcgtccaacaacactgctttgacaggtgagacagtgtttttgattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||| || || ||||| |||||||| |||||||| ||||||| |||| |
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|
| T |
49340178 |
ttaatctgtttcagccattcacgtagctcattgttctgccattgcttttgttcagcatctaataacacggctttgacgagtgagacaatgttttttattt |
49340079 |
T |
|
| Q |
301 |
cttgaagatcgtcgtagacacc |
322 |
Q |
| |
|
||| ||||||||| |||||||| |
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|
| T |
49340078 |
cttaaagatcgtcatagacacc |
49340057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 29603183 - 29603373
Alignment:
| Q |
33 |
atatgtttgatttgatgtgccattttaaggtgataaacaagaggattagaattcgagaagaaacattttaccttccttctgatgctacctgaagtgttga |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| | || ||| ||| | ||||||||||||||||||||| |||||||||| |
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|
| T |
29603183 |
atatgtttgatttgatgtgccattttaaggcgataaacaagaggattagaactggataagtaacgtcgtaccttccttctgatgctaccagaagtgttga |
29603282 |
T |
|
| Q |
133 |
tgatttgctttcgtgaggcctcacattcaaaatcatcgattacatcttcggcatcgtagaagacccgcttaatctgtttcagccattcacg |
223 |
Q |
| |
|
| |||||||| | ||||| || |||||||||| |||||||||||| |||||||||||||| || || ||||||| |||||||||||| |
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|
| T |
29603283 |
ctacgtgctttcgcaatgcctcgcactcaaaatcattgattacatcttctgcatcgtagaagacacgtttgatctgttgcagccattcacg |
29603373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 35 - 223
Target Start/End: Complemental strand, 29750109 - 29749921
Alignment:
| Q |
35 |
atgtttgatttgatgtgccattttaaggtgataaacaagaggattagaattcgagaagaaacattttaccttccttctgatgctacctgaagtgttgatg |
134 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| | || ||| ||| | ||||||||||||||||||||| |||||||||| |
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|
| T |
29750109 |
atgtttgatttgatgtgccattttaaggcgataaacaagaggattagaactggataagtaacgtcgtaccttccttctgatgctaccagaagtgttgact |
29750010 |
T |
|
| Q |
135 |
atttgctttcgtgaggcctcacattcaaaatcatcgattacatcttcggcatcgtagaagacccgcttaatctgtttcagccattcacg |
223 |
Q |
| |
|
| |||||||| | ||||| || |||||||||| |||||||||||| |||||||||||||| || || ||||||| |||||||||||| |
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|
| T |
29750009 |
acgtgctttcgcaatgcctcgcactcaaaatcattgattacatcttctgcatcgtagaagacacgtttgatctgttgcagccattcacg |
29749921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 29743105 - 29742926
Alignment:
| Q |
2 |
atcagcagcaaccttatcaaatctttctttgatatgtttgatttgatgtgccattttaaggtgataaacaagaggattagaattcgagaagaaacatttt |
101 |
Q |
| |
|
||||||||||||||||| ||| | | || |||||||||||||||||||||||||||||| ||||||||||| ||||||| | |||||| | | || | |
|
|
| T |
29743105 |
atcagcagcaaccttattcaatttcttattaatatgtttgatttgatgtgccattttaaggcgataaacaagaaaattagaactggagaagtatcgttgt |
29743006 |
T |
|
| Q |
102 |
accttccttctgatgctacctgaagtgttgatgatttgctttcgtgaggcctcacattcaaaatcatcgattacatcttc |
181 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| || ||||| || | |||||||| | ||||||||||||||||||||| |
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|
| T |
29743005 |
accttccttccgatgctaccagaagtgttgactatgtgcttccgcaatgcctcacactgaaaatcatcgattacatcttc |
29742926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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