View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_low_17 (Length: 357)
Name: NF3999_low_17
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 54727505 - 54727836
Alignment:
| Q |
1 |
ctgtaactgcatctttcgctggctttgctatttctttgactaagcattctgcaattgcagctttgtgttctttgaggattgcagctgccttgtgaagaag |
100 |
Q |
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| T |
54727505 |
ctgtaactgcatctttcgctggctttgctatttctttgactaagcattctgcaattgcagctttgtgttctttgaggattgcagctgccttgtgaagaag |
54727604 |
T |
|
| Q |
101 |
ttcagccctcttccaaagtggagtctttgcccatgacttttgtgctgcttttgctgaatccataaccttattaacttcctcttgtgaacaagctgcatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54727605 |
ttcagccctcttccaaagtggagtctttgcccatgacttttgtgctgcttttgctgaatccataaccttattaacttcctcttgtgaacaagctgcatgg |
54727704 |
T |
|
| Q |
201 |
atatcattctaagaggattagagcttattgaacacagttcttatctgttatattatttatctatcatttatcaatctagttttttatacaatcatcaaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
54727705 |
atatcattctaagaggattagagcttattgaacacagttcttatctgttat--------------atttatcaatctagttttttatacaatcatcaaaa |
54727790 |
T |
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| Q |
301 |
gaatgatctagcgttcaaatgtcatctcctttctttataacttcat |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54727791 |
gaatgatctagcgttcaaatgtcatctcctttctttataacttcat |
54727836 |
T |
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