View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3999_low_20 (Length: 334)

Name: NF3999_low_20
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3999_low_20
NF3999_low_20
[»] chr2 (2 HSPs)
chr2 (34-326)||(41070779-41071065)
chr2 (54-124)||(36904034-36904104)
[»] chr7 (2 HSPs)
chr7 (54-137)||(48488394-48488477)
chr7 (84-137)||(28514697-28514750)
[»] chr5 (2 HSPs)
chr5 (52-124)||(564896-564968)
chr5 (79-137)||(34338964-34339022)
[»] chr8 (2 HSPs)
chr8 (172-223)||(13018449-13018500)
chr8 (54-124)||(13079268-13079338)
[»] chr4 (2 HSPs)
chr4 (52-149)||(55969842-55969938)
chr4 (172-216)||(3121026-3121070)
[»] chr1 (2 HSPs)
chr1 (45-102)||(4044943-4045000)
chr1 (84-148)||(3831387-3831451)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 34 - 326
Target Start/End: Original strand, 41070779 - 41071065
Alignment:
Q  34 cactttcgattaaaatatgaaaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgtggagttata 133  Q
    |||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||  |||||      ||||||||||||||||||||||||||||    
T  41070779 cactttcgattaaaatatgaaaaatgttaacaagtgcatttataatattttttaagcattcaaaat------cgtttgcattggaaattgtggagttata 41070872  T
Q  134 actttagcatgtgtttctaagacaaannnnnnnnaataggttccttgaacaatgcgcttaggacacttgttaccaaaacctttaaaatatttagacattt 233  Q
    |||||| ||||||||||||||||||         |||||||||||| |||||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  41070873 actttaacatgtgtttctaagacaatttttttttaataggttccttaaacaatgcacttgggacacttgttagcaaaacctttaaaatatttagacattt 41070972  T
Q  234 tattttagagaatcgaaactaaaactagcacactcgaagtctcaagtcaacatcactaaaccaactcaactataaaattactacattcatctc 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  41070973 tattttagagaatcgaaactaaaactagcacactcgaagtctcaagtcaacatcactaaaccaactcaaatatagaattactacattcatctc 41071065  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 36904104 - 36904034
Alignment:
Q  54 aaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgt 124  Q
    |||||||||||||||||  | | |  ||| ||||||||||||||| |||| || |||||||||||||||||    
T  36904104 aaaatgctaacaagtgtcctaagggcattgtttaagcatctaaaagtagcaacttttgcattggaaattgt 36904034  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 48488394 - 48488477
Alignment:
Q  54 aaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactt 137  Q
    ||||||||||||||||  || | | |||| ||||||||||||||| |||| || |||||||||||||||||   ||||||||||    
T  48488394 aaaatgctaacaagtggcttaagggtattgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataactt 48488477  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 28514750 - 28514697
Alignment:
Q  84 tttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactt 137  Q
    ||||||||||||||| |||| || |||||||||||||||||   ||||||||||    
T  28514750 tttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataactt 28514697  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 564896 - 564968
Alignment:
Q  52 gaaaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgt 124  Q
    ||||||||||||||| |||  ||| || ||| ||||||||||||||| |||  || |||||||||||||||||    
T  564896 gaaaaatgctaacaaatgtccttaggacattgtttaagcatctaaaaatagtaacttttgcattggaaattgt 564968  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 34339022 - 34338964
Alignment:
Q  79 tattttttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactt 137  Q
    |||| ||||||||||||||| |||| || ||||||||||||| ||||  ||||||||||    
T  34339022 tattgtttaagcatctaaaaatagcaacttttgcattggaaagtgtgtggttataactt 34338964  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 13018500 - 13018449
Alignment:
Q  172 ggttccttgaacaatgcgcttaggacacttgttaccaaaacctttaaaatat 223  Q
    |||||||| |||||||| |||||||||||||||| ||| ||| |||||||||    
T  13018500 ggttccttaaacaatgcccttaggacacttgttaacaagacccttaaaatat 13018449  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 13079268 - 13079338
Alignment:
Q  54 aaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgt 124  Q
    |||||||||||| |||| |||| |||||| ||||||||||||||| |||  || ||| ||| |||||||||    
T  13079268 aaaatgctaacaggtgtttttaagatattgtttaagcatctaaaagtagtaacttttacataggaaattgt 13079338  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 55969842 - 55969938
Alignment:
Q  52 gaaaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactttagcatgtgttt 149  Q
    ||||||||||||||||||| || | | |||| ||||||||| ||||| |||| || ||||||||  ||||||| | ||| | |||||| |||||||||    
T  55969842 gaaaaatgctaacaagtgt-ttaagggtattgtttaagcatataaaaatagcaacttttgcattaaaaattgtagggttgtgactttaacatgtgttt 55969938  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 3121070 - 3121026
Alignment:
Q  172 ggttccttgaacaatgcgcttaggacacttgttaccaaaaccttt 216  Q
    |||||||| |||||||| |||||||||||||||| ||| ||||||    
T  3121070 ggttccttaaacaatgctcttaggacacttgttaacaacaccttt 3121026  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 4045000 - 4044943
Alignment:
Q  45 aaaatatgaaaaatgctaacaagtgtatttatgatattttttaagcatctaaaattag 102  Q
    ||||||||||||||||||| |||| | |||| || ||| |||||||||||| ||||||    
T  4045000 aaaatatgaaaaatgctaataagtatctttaggacattgtttaagcatctataattag 4044943  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 3831387 - 3831451
Alignment:
Q  84 tttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactttagcatgtgtt 148  Q
    ||||||||||||||| |||  |  |||||||||||||||||  |||||| |||||| ||||||||    
T  3831387 tttaagcatctaaaagtagaaatttttgcattggaaattgtacagttatgactttaacatgtgtt 3831451  T

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