View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_low_22 (Length: 291)
Name: NF3999_low_22
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 37444807 - 37444549
Alignment:
| Q |
16 |
taggcagaaatgtgtttattttagtgggtccgaatggactaattccgtatattcatgagtttgattttgatatacaatgtcttttgcaaattttttacac |
115 |
Q |
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| T |
37444807 |
taggcagaaatgtgtttattttagtgggtccaaatggactaattctgtatattcatgagtttgattttgatatacaatgtcttttgcaaattttttacac |
37444708 |
T |
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| Q |
116 |
agtcaatcaatctgacaatcttattcatgattttgtggtttttaagatatgtgaaactttattaaaccagttattgataataagtttgtattcaattctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37444707 |
agtcaatcaatctgacaatcttattcatgattttgtggtttttaagatatgtgaaactttattaaaccagttattgataataagtttgtattcaattctg |
37444608 |
T |
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| Q |
216 |
agtttctgtcggttttgatcaaaaaacctttttcggggtgggggtttgtggtttgaatg |
274 |
Q |
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| T |
37444607 |
agtttctgtcggttttgatcaaaaaacctttttcggggtgggggtttgtggtttgaatg |
37444549 |
T |
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