View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_low_25 (Length: 266)
Name: NF3999_low_25
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 14831537 - 14831639
Alignment:
| Q |
17 |
aggaataaattgaagaaaagtagcaacggtgcaaagaaggagaagggttgttattagaagtttaagttcagctgcgtagcttccaaacaaggttgtgaag |
116 |
Q |
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| T |
14831537 |
aggaataaattgaagaaaagtagcaacggtgcaaagaagtagaagggttgtaattagaagtttaagttcagctgcgtagcttccaaacaaggttgtgaag |
14831636 |
T |
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| Q |
117 |
agc |
119 |
Q |
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||| |
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| T |
14831637 |
agc |
14831639 |
T |
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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 14831710 - 14831779
Alignment:
| Q |
187 |
gagaagagaagaagagggaagcacttattttgtgctttgtggttttgggatgtgtgtgttgtggtgatgt |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14831710 |
gagaagagaagaagagggaagcacttattttgtgctttgtggttttgggatgtgtgtgttgtggtgatgt |
14831779 |
T |
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