View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_low_27 (Length: 258)
Name: NF3999_low_27
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 19757436 - 19757199
Alignment:
| Q |
11 |
catcatcacaggagatcattccttcataaccttttcattgttcaaaggaattggagaaaatcaattgatattaagcaaatgtggtgaatcatatgtcaat |
110 |
Q |
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| T |
19757436 |
catcatcacaggagatcattccttcataaccttgtcattgttcaaaggaattggagaaaatcaattgatattaagcaaatatggtgaatcatatgtcaat |
19757337 |
T |
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| Q |
111 |
gaannnnnnnnnnnnnn--aaataacaataaataaaccaagaaagtaagaaagaaaaacctttggcttgggtaatagttatggtgaatgaaagtggttga |
208 |
Q |
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| T |
19757336 |
gaattttttatttttttttaaataacaataaataaaccgagaaagtaagaaagaaaaacctttggcttgggtaatagttatggtgaatgaaagtggttga |
19757237 |
T |
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| Q |
209 |
agttgagtcatcacaaatttacatttatcaccaacttg |
246 |
Q |
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| T |
19757236 |
agttgagtcatcacaaatttacatttatcaccaacttg |
19757199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 12977209 - 12977291
Alignment:
| Q |
150 |
aaagtaagaaagaaaaacctttggcttgggtaatagttatggtgaatgaaagtggttgaagttgagtcatcacaaatttacat |
232 |
Q |
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| T |
12977209 |
aaagtaagaaggaaaaacctttggcttgggtaatagttatggtgaatgaaagtggatgaagttgagtcatcacaaatttacat |
12977291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 12977092 - 12977188
Alignment:
| Q |
12 |
atcatcacaggagatcattccttcataaccttttcattgttcaaaggaattggagaaaatcaattgatattaagcaaatgtggtgaatcatatgtcaatg |
111 |
Q |
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| T |
12977092 |
atcatcacaagagattattccttcataaccttgtcattgttcaaaggaattgg-----atcaattgagtttaagcaaatgtggtgaatcacatgtcaatg |
12977186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 12995600 - 12995533
Alignment:
| Q |
179 |
gtaatagttatggtgaatgaaagtggttgaagttgagtcatcacaaatttacatttatcaccaacttg |
246 |
Q |
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| T |
12995600 |
gtaatagtaatagtgaataaaagtggttctctttgagtcatcacaaatttacatttatcaccaacttg |
12995533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 12991442 - 12991378
Alignment:
| Q |
179 |
gtaatagttatggtgaatgaaagtggttgaagttgagtcatcacaaatttacatttatcaccaac |
243 |
Q |
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| T |
12991442 |
gtaatagtaacggtgaatgaaagtggttctctttgagtcatcacaaatttacattcatcaccaac |
12991378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 12989347 - 12989313
Alignment:
| Q |
211 |
ttgagtcatcacaaatttacatttatcaccaactt |
245 |
Q |
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| T |
12989347 |
ttgagtcatcacaaatttacatttatcaccaactt |
12989313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 12910167 - 12910102
Alignment:
| Q |
180 |
taatagttatggtgaatgaaagtggttgaagttgagtcatcacaaatttacatttatcaccaactt |
245 |
Q |
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| T |
12910167 |
taatagtaattgtgaatgaaagtggttagcgttgagtcatctcaaatttacatacatcaccaactt |
12910102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 21116026 - 21115964
Alignment:
| Q |
180 |
taatagttatggtgaatgaaagtggttgaagttgagtcatcacaaatttacatttatcaccaa |
242 |
Q |
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| T |
21116026 |
taatagtaattgtgaatgaaagtggttcacgttgagtcatctcaaatttacatgcatcaccaa |
21115964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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