View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_low_31 (Length: 252)
Name: NF3999_low_31
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 45312780 - 45312999
Alignment:
| Q |
11 |
cagagataattcaagtcaattttgaggaagccaataatatgttttccttctcattctttacaaattgagtttttgtcaaattcacgattttctcaaggaa |
110 |
Q |
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| T |
45312780 |
cagagataattcaagtcaattttgaggaagccaataatatgttttccttctcattctttacaaattgagtttttgtcaaattcacgattttctcaaggaa |
45312879 |
T |
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| Q |
111 |
gctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttcttcacgcttgctgctatctcaatccttacatccat |
210 |
Q |
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| T |
45312880 |
gctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttctttacgcttgctgctatctcaatccttacatcctt |
45312979 |
T |
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| Q |
211 |
tattaacattcctccacaat |
230 |
Q |
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| T |
45312980 |
tattaacattcctccacaat |
45312999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 27758540 - 27758687
Alignment:
| Q |
83 |
ttgtcaaattcacgattttctcaaggaagctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttcttcacgc |
182 |
Q |
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| T |
27758540 |
ttgtctaattcacgattttctcaaggaagctagtaattgtttttcctcgaataggtgcatttggctgaatatggtgtgcattggaatttcttcttcacgc |
27758639 |
T |
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| Q |
183 |
ttgctgctatctcaatccttacatccattattaacattcctccacaat |
230 |
Q |
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| T |
27758640 |
ttgctgctatctcgatccttacatccgttattaacattcctccacaat |
27758687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 27758441 - 27758512
Alignment:
| Q |
13 |
gagataattcaagtcaattttgaggaagccaataatatgttttccttctcattctttacaaattgagttttt |
84 |
Q |
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| T |
27758441 |
gagataattcaagtcaatttttaggaagccaataatatattttccttctcattctttacacattaagttttt |
27758512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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