View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_low_33 (Length: 247)
Name: NF3999_low_33
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 36671998 - 36672229
Alignment:
| Q |
1 |
aggatttttcgaaatccacctaaggagcattatataaggtatttaatgcgcatttgctacttttgttttagaagaacaaaggtgtccaaattcaacaagn |
100 |
Q |
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| T |
36671998 |
aggatttttcgaaatccacctaaggggcattatataaggtatttaatgcgcatttgctacttttgttttagaagaacaaaggtgtccaaattcaacaaga |
36672097 |
T |
|
| Q |
101 |
nnnnnngtagtgacataatgctttaaataaccatgagaacaaagaagcataatcatgcttcactcattttaagattttagattgaggcaagatttacact |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36672098 |
aaaaaagtcgtgacataatgctttaaataaccatgagaacaaagaagtataatcatgcttcactcattttaagattttagattgaggtaagatttacact |
36672197 |
T |
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| Q |
201 |
gtcgacacacctcttagattagaagttcacag |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
36672198 |
gtcgacacacctcttagattagaagttcacag |
36672229 |
T |
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