View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3999_low_35 (Length: 245)

Name: NF3999_low_35
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3999_low_35
NF3999_low_35
[»] chr1 (3 HSPs)
chr1 (110-245)||(34469019-34469154)
chr1 (18-63)||(34469188-34469233)
chr1 (64-111)||(52111497-52111544)
[»] chr6 (3 HSPs)
chr6 (64-111)||(8251318-8251365)
chr6 (64-111)||(5358852-5358899)
chr6 (77-109)||(2800011-2800043)
[»] chr3 (2 HSPs)
chr3 (61-111)||(29360922-29360972)
chr3 (64-109)||(3090758-3090802)
[»] chr4 (1 HSPs)
chr4 (64-111)||(9597878-9597925)
[»] chr7 (1 HSPs)
chr7 (67-107)||(33222537-33222577)
[»] chr8 (1 HSPs)
chr8 (64-109)||(20521500-20521545)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 110 - 245
Target Start/End: Complemental strand, 34469154 - 34469019
Alignment:
Q  110 actaagttcgtactagtgtccagatttggtatttactcacnnnnnnnagcatcataactattctacaattttcggtataaacttaaaatatgactgttat 209  Q
    ||||||||||||||||| |||||||||||||||||||| |       |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34469154 actaagttcgtactagtttccagatttggtatttactctctttttttagcaacataactattctacaattttcggtataaacttaaaatatgactgttat 34469055  T
Q  210 cacgccatggtccaattctacatcttaacatggcaa 245  Q
    ||||||||||||||||||||||||||||||||||||    
T  34469054 cacgccatggtccaattctacatcttaacatggcaa 34469019  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 34469233 - 34469188
Alignment:
Q  18 agaactaatggagggactacttcatcaatattttgatataaatgag 63  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  34469233 agaactaatggatggactacttcatcaatattttgatataaatgag 34469188  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 52111544 - 52111497
Alignment:
Q  64 gagaaagtcttgtataggcacaagcatttagactcaaaatttaggcac 111  Q
    |||||||||||||||||||||||  |||||||| ||||||||| ||||    
T  52111544 gagaaagtcttgtataggcacaaatatttagacacaaaatttaagcac 52111497  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 8251365 - 8251318
Alignment:
Q  64 gagaaagtcttgtataggcacaagcatttagactcaaaatttaggcac 111  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8251365 gagaaagtcttgtataggcacaagcatttagacacaaaatttaggcac 8251318  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 5358899 - 5358852
Alignment:
Q  64 gagaaagtcttgtataggcacaagcatttagactcaaaatttaggcac 111  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||    
T  5358899 gagaaagtcttgtataagcacaagcatttagacacaaaatttaggcac 5358852  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 2800011 - 2800043
Alignment:
Q  77 ataggcacaagcatttagactcaaaatttaggc 109  Q
    |||||||||||||||||||| ||||||||||||    
T  2800011 ataggcacaagcatttagacacaaaatttaggc 2800043  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 29360922 - 29360972
Alignment:
Q  61 gaggagaaagtcttgtataggcacaagcatttagactcaaaatttaggcac 111  Q
    |||||||||||||| ||||||||||||||||||||| |||||| |||||||    
T  29360922 gaggagaaagtcttatataggcacaagcatttagacacaaaatgtaggcac 29360972  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 3090802 - 3090758
Alignment:
Q  64 gagaaagtcttgtataggcacaagcatttagactcaaaatttaggc 109  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  3090802 gagaaagtcttgtatag-cacaagcatttagacacaaaatttaggc 3090758  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 9597878 - 9597925
Alignment:
Q  64 gagaaagtcttgtataggcacaagcatttagactcaaaatttaggcac 111  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||||||    
T  9597878 gagaaagtcttgtataggcacaagcatataggcacaaaatttaggcac 9597925  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 33222537 - 33222577
Alignment:
Q  67 aaagtcttgtataggcacaagcatttagactcaaaatttag 107  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  33222537 aaagtcttgtataggcacaagcatatagacacaaaatttag 33222577  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 20521500 - 20521545
Alignment:
Q  64 gagaaagtcttgtataggcacaagcatttagactcaaaatttaggc 109  Q
    ||||||||||||  ||||||||||||||| ||| ||||||||||||    
T  20521500 gagaaagtcttgcgtaggcacaagcatttggacacaaaatttaggc 20521545  T

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