View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_low_37 (Length: 243)
Name: NF3999_low_37
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 54727274 - 54727504
Alignment:
| Q |
1 |
tgaggcaatatttggtcctttcatttcccggaaagctatctgaaaccagaaactttccctctccaagaatccttactccttcttcagcacagtaagaaac |
100 |
Q |
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| T |
54727274 |
tgaggcaatatttggtcctttcatttcccggaaagctatctgaaaccagaaactttccctctccaagaatccttactccttcttcagcacagtaagaaac |
54727373 |
T |
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| Q |
101 |
caaatcaccagatcttacaaccttcattg-nnnnnnnnnnnnnnttccaattattttcataatttctcaagattatagtcctaaacaacacttaacttat |
199 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54727374 |
caaatcaccagatcttacaaccttcattgaaaaaaataaaaaaattccaattattttcataatttctcaagattatagtcctaaacaacacttaacttat |
54727473 |
T |
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| Q |
200 |
tcaacataacaatgtaaaacaatatgcacct |
230 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
54727474 |
tcaacataacaatgtaaaacaatatgcacct |
54727504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 3007369 - 3007255
Alignment:
| Q |
9 |
tatttggtcctttcatttcccggaaagctatctgaaaccagaaactttccctctccaagaatccttactccttcttcagcacagtaagaaaccaaatcac |
108 |
Q |
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|||||||| |||||||| || ||||| ||||| || |||||||||||||| ||||| ||||| ||||||||||| || ||||| || || |||||||| | |
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| T |
3007369 |
tatttggttctttcattgcctggaaaactatcagacaccagaaactttccttctccgagaattcttactccttcctcggcacaatatgacaccaaatccc |
3007270 |
T |
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| Q |
109 |
cagatcttacaacct |
123 |
Q |
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| T |
3007269 |
ctgatctaacaacct |
3007255 |
T |
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