View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3999_low_38 (Length: 243)
Name: NF3999_low_38
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_low_38 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 107 - 231
Target Start/End: Complemental strand, 31714241 - 31714117
Alignment:
| Q |
107 |
tcattgaataagttgttaaatttaggctcacgcgctgcataatcccatattaacatcccatgtgtagttccaaatgttgaaggatcatcggtttttaacc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31714241 |
tcattgaataagttgttaaatttaggctcacgcgccgcataatcccacatcgacatcccatgtgtagttccaaatgttgaaggatcatcagtttttaacc |
31714142 |
T |
|
| Q |
207 |
aactggacatttcatgccacaggtt |
231 |
Q |
| |
|
||| |||||||||||||||| |||| |
|
|
| T |
31714141 |
aaccggacatttcatgccacgggtt |
31714117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 31714302 - 31714243
Alignment:
| Q |
17 |
acatcaaccaatgattccaatccattgaacatttcaccacacttctcaatcaccacactt |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
31714302 |
acatcaaccaatgattccaatccattgaacactccaccacacttctcaatcaccacactt |
31714243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 31702899 - 31702708
Alignment:
| Q |
17 |
acatcaaccaatgattccaatccattgaacatttcaccacacttctcaatcaccacacttgtgaccaatcgagcatcactcaccattgcatcattgaata |
116 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | | | | ||||||||||||| || | | || || ||||||| |||||| |||| | |||||||||| |
|
|
| T |
31702899 |
acatcaaccaatgactccaacccattgaatactcccctgcacttctcaatcaacaaattggtcactaatcgagtatcacttgccatggactcattgaata |
31702800 |
T |
|
| Q |
117 |
agttgttaaatttaggctcacgcgctgcataatcccatattaacatcccatgtgtagttccaaatgttgaaggatcatcggtttttaaccaa |
208 |
Q |
| |
|
||||| ||||||| | |||| ||| |||| ||||||| ||||||| ||||| ||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
31702799 |
agttgctaaatttggagtcacacgcaacatattcccataacaacatcctgtgtgtcgtttcaaatgttgtaggatcatcattttttaaccaa |
31702708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 31734649 - 31734549
Alignment:
| Q |
107 |
tcattgaataagttgttaaatttaggctcacgcgctgcataatcccatattaacatcccatgtgtagttccaaatgttgaaggatcatcggtttttaacc |
206 |
Q |
| |
|
||||| ||||||||||||||||| | |||| ||| ||||| ||||||| |||||||| ||||| ||| |||||| || || |||||| ||||||||| |
|
|
| T |
31734649 |
tcattaaataagttgttaaatttggagtcacacgcagcatattcccataacaacatcccgtgtgtcgtttcaaatgatgtagtatcatcattttttaacc |
31734550 |
T |
|
| Q |
207 |
a |
207 |
Q |
| |
|
| |
|
|
| T |
31734549 |
a |
31734549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University