View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_low_39 (Length: 239)
Name: NF3999_low_39
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 47551190 - 47551382
Alignment:
| Q |
1 |
agcagatcaaataggcgttagtggtaactcattctttcagatgcatgtttgaaacatatattgttgacatggttggtaaattgtttttatgtttcttaat |
100 |
Q |
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| T |
47551190 |
agcagatcaaataggcgttagtggtaactcattctttcagatgcatgtttggaacatatattgttgacttggttggtaaattgtttttatgtttcttaat |
47551289 |
T |
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| Q |
101 |
attgat--agaatgctttgattaatcaatggctgatgtgtaacttagatattatattcttattattgaaccagttttatccaaattggatacg |
191 |
Q |
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| T |
47551290 |
attgattgagaatgctttgattaatcaatggctgatgtgtaacttagatattatgttcttattattgaatcagttttatccaaattggatacg |
47551382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 47538426 - 47538571
Alignment:
| Q |
4 |
agatcaaataggcgttagtggtaactcattctttcagatgcatgtttgaaacatatattgttgacatggttggtaaattgtttttatgtttcttaatatt |
103 |
Q |
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| T |
47538426 |
agatcaaataggccttagtggtaactcattcttccagaagcatgtctggaacatatattgttgac----ttggtaaattgtttttatgtttctcaatatt |
47538521 |
T |
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| Q |
104 |
gat--aga--atgctttgattaatcaatggctgatgtgtaacttagatat |
149 |
Q |
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| T |
47538522 |
gattcagactgtgttttgattaatcaatggctgatgtgtaacttagatat |
47538571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 47544983 - 47545128
Alignment:
| Q |
4 |
agatcaaataggcgttagtggtaactcattctttcagatgcatgtttgaaacatatattgttgacatggttggtaaattgtttttatgtttcttaatatt |
103 |
Q |
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||||||||||||| ||||||||||||||||||| |||| |||||| || |||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
47544983 |
agatcaaataggccttagtggtaactcattcttccagaagcatgtctggaacatatattgttgac----ttggtaaattgtttttatgtttctcaatatt |
47545078 |
T |
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| Q |
104 |
gat--aga--atgctttgattaatcaatggctgatgtgtaacttagatat |
149 |
Q |
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||| ||| || |||||||||||||||||||||||||||||||||||| |
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| T |
47545079 |
gattcagactgtgttttgattaatcaatggctgatgtgtaacttagatat |
47545128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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