View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3999_low_7 (Length: 516)
Name: NF3999_low_7
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3999_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 2400913 - 2400602
Alignment:
| Q |
1 |
atagcttgtgtcgtctcaatcctctatatatagctattacatatgttatagctaggaacaataattaaagcacttgcactttgaattagaacccattaca |
100 |
Q |
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| T |
2400913 |
atagcttgtgtcgtctcaatcctctatatatagctattacatatgttatagctaggaacaataattaaagtacttgcactttgaa---gaacccattaca |
2400817 |
T |
|
| Q |
101 |
ctaatttagccaactagcttaattaaggatatgtctagtcgaagatcaaggcaacaatcaggtgggtctacacggatttctgatgaccaaattatcgacc |
200 |
Q |
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| T |
2400816 |
ctaatttagacaactagcttaattaaggatatgtctagtcgaaggtcaaggcaacaatcaggagggtctactcggatctctgatgaccaaatcatcgacc |
2400717 |
T |
|
| Q |
201 |
ttgtttgcaaattgcgtcaacttgttcctgagattcgtaataggcaatctgacaaggtactatagctatttcaatcactctatagtatagatacacacta |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2400716 |
ttgtttgcaaattgcgccaacttgttcctgagattcgtaataggcgctctgacaaggtactatagctatttcaatcactct-----atagatacacacta |
2400622 |
T |
|
| Q |
301 |
ttcataaggatgttaaagtt |
320 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2400621 |
ttcataaggatgttaaagtt |
2400602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 3400556 - 3400473
Alignment:
| Q |
176 |
atttctgatgaccaaattatcgaccttgtttgcaaattgcgtcaacttgttcctgagattcgtaataggcaatctgacaaggta |
259 |
Q |
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||||||||||| ||||| ||||| ||||||| ||| || |||||||||||||||||||||||| |||||| || ||||||||| |
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| T |
3400556 |
atttctgatgatcaaatcatcgaacttgtttccaagttacgtcaacttgttcctgagattcgtcataggcgttcagacaaggta |
3400473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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