View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3999_low_8 (Length: 502)

Name: NF3999_low_8
Description: NF3999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3999_low_8
NF3999_low_8
[»] chr1 (3 HSPs)
chr1 (166-484)||(39209908-39210197)
chr1 (198-381)||(24036791-24036979)
chr1 (391-484)||(24037019-24037116)
[»] chr8 (5 HSPs)
chr8 (198-380)||(27513624-27513806)
chr8 (239-380)||(8675103-8675245)
chr8 (391-484)||(27513835-27513926)
chr8 (415-484)||(8674971-8675040)
chr8 (116-165)||(34154786-34154834)
[»] chr4 (2 HSPs)
chr4 (81-165)||(47952641-47952725)
chr4 (81-165)||(26594638-26594724)
[»] chr3 (2 HSPs)
chr3 (227-376)||(9461139-9461298)
chr3 (97-165)||(47594475-47594543)
[»] chr2 (1 HSPs)
chr2 (208-320)||(38950770-38950885)
[»] chr6 (2 HSPs)
chr6 (272-324)||(18331979-18332031)
chr6 (203-270)||(18331878-18331945)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 8e-93; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 166 - 484
Target Start/End: Complemental strand, 39210197 - 39209908
Alignment:
Q  166 ttcttgtatacatcaaatggagcctccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatca 265  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  39210197 ttcttgtatacatcaaatggaacctccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttc---------- 39210108  T
Q  266 aaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctctggaagct 365  Q
          |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||| ||||||||    
T  39210107 ------aaaaaaatcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaagg-----------ttcttctatggaagct 39210025  T
Q  366 acaacaacacagaaacnnnnnnnnntcaaaacaacaacagccattcagtgagagagagtgaacctcttcaccgagctcgatagctctttcaataacagca 465  Q
    |||||||||||||||          |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39210024 acaacaacacagaaa--taaaaaaatcaaaacaacaacatccattcagtgagagagagtgaacctcttcaccgagctcgatagctctttcaatagcagca 39209927  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 198 - 381
Target Start/End: Original strand, 24036791 - 24036979
Alignment:
Q  198 aatatatattctacactcacaacattggaatctaatctattcatattcaaatt-agttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca 296  Q
    ||||||||||||||||||| ||||||| ||||| || |||| |||| |||||| || ||||||||||||||| | |||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca 24036889  T
Q  297 gg----cttgcagatagtttcatcaacttcccttgtattttcaagg-tcttcggcaccttcttctctggaagctacaacaacacagaaac 381  Q
    ||    |||||||||||||||||||||||  ||||||| ||| |   ||||||||| ||| ||||| |||||||||||||||||||||||    
T  24036890 ggatggcttgcagatagtttcatcaacttagcttgtatcttcgatcatcttcggcagctttttctccggaagctacaacaacacagaaac 24036979  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 484
Target Start/End: Original strand, 24037019 - 24037116
Alignment:
Q  391 tcaaaacaacaacagccattcagtgagagagagtga----acctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttag 484  Q
    |||||||||||||||| ||||| |||||||||| ||    ||||||||||||| ||||||||| |||| || | || |||||||||||||||||||||    
T  24037019 tcaaaacaacaacagcgattcaatgagagagagagagcgaacctcttcaccgatctcgatagcgcttttaacagcaacatcgcgagctttcgacttag 24037116  T

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Target: chr8 (Bit Score: 163; Significance: 8e-87; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 198 - 380
Target Start/End: Original strand, 27513624 - 27513806
Alignment:
Q  198 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 297  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag 27513723  T
Q  298 gcttgcagatagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctctggaagctacaacaacacagaaa 380  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27513724 gcttgcaggtagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctctggaagctacgacaacacagaaa 27513806  T

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Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 239 - 380
Target Start/End: Complemental strand, 8675245 - 8675103
Alignment:
Q  239 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaa-g 337  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||      
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttcccttgtattctcaatc 8675146  T
Q  338 gtcttcggcaccttcttctctggaagctacaacaacacagaaa 380  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  8675145 gtcttcggcaccttcttctccggaggctacaacaacacagaaa 8675103  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 391 - 484
Target Start/End: Original strand, 27513835 - 27513926
Alignment:
Q  391 tcaaaacaacaacagccattcagtgagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttag 484  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||    
T  27513835 tcaaaacaacaacagccattcagtgagagagag--aacctcttcaccgagctcgatagctctttcaatagtagcatcgtgagctttcgacttag 27513926  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 415 - 484
Target Start/End: Complemental strand, 8675040 - 8674971
Alignment:
Q  415 gagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttag 484  Q
    |||||||||||||||||||||||||||||||||||||||| || | ||||||| ||||| || |||||||    
T  8675040 gagagagagtgaacctcttcaccgagctcgatagctcttttaacagcagcatcacgagcattagacttag 8674971  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 34154786 - 34154834
Alignment:
Q  116 aggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 165  Q
    ||||||||| | |||||||||||||| |||||||||| ||||||||||||    
T  34154786 aggtgtagaattgtatgttgccacat-agtgtgtcaatgtatcatctctc 34154834  T

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Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 47952641 - 47952725
Alignment:
Q  81 tatcattatttattggttttttattaggatatggaaggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 165  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47952641 tatcattatttattgtttttttattagcatatgggaggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 47952725  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 26594638 - 26594724
Alignment:
Q  81 tatcattatttattggttttttattaggatatg-ga-aggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 165  Q
    ||||||||||||||| ||||||||| | ||||| || ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  26594638 tatcattatttattgtttttttattggtatatgagagaggtgtagagtggtatgttgccacataagtgtgtccatgtatcatctctc 26594724  T

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Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 227 - 376
Target Start/End: Complemental strand, 9461298 - 9461139
Alignment:
Q  227 atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 317  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 9461199  T
Q  318 acttcccttgtattttcaa-ggtcttcggcaccttcttctctggaagctacaacaacaca 376  Q
    |||||| |  |||||||||   |||||  ||||||||| |  ||||||| ||||||||||    
T  9461198 acttccttcttattttcaataatcttcaacaccttcttattcggaagctgcaacaacaca 9461139  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 47594543 - 47594475
Alignment:
Q  97 ttttttattaggatatggaaggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 165  Q
    ||||||||| | || ||| ||||||||| ||||||||||||| ||| | |||||||||||||| |||||    
T  47594543 ttttttattggcatttgggaggtgtagaatggtatgttgccatataggggtgtcaacgtatcagctctc 47594475  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 320
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  208 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 301  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  302 gcagatagtttcatcaact 320  Q
    |||||||||||||||||||    
T  38950867 gcagatagtttcatcaact 38950885  T

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Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
Q  272 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccc 324  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc 18332031  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  203 atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 270  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

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