View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4000_high_10 (Length: 252)

Name: NF4000_high_10
Description: NF4000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4000_high_10
NF4000_high_10
[»] chr1 (18 HSPs)
chr1 (1-237)||(5601-5838)
chr1 (50-218)||(44938529-44938698)
chr1 (21-113)||(14595-14687)
chr1 (51-115)||(34032038-34032102)
chr1 (51-115)||(44257639-44257703)
chr1 (51-115)||(50249439-50249503)
chr1 (50-156)||(8565852-8565957)
chr1 (51-115)||(14373371-14373435)
chr1 (51-115)||(52023931-52023995)
chr1 (56-131)||(14593308-14593383)
chr1 (51-114)||(34047191-34047254)
chr1 (50-115)||(39125732-39125797)
chr1 (51-115)||(26352039-26352103)
chr1 (51-115)||(27721087-27721151)
chr1 (51-115)||(30293465-30293529)
chr1 (50-115)||(12484585-12484650)
chr1 (51-115)||(27721202-27721266)
chr1 (50-114)||(44557016-44557080)
[»] chr3 (8 HSPs)
chr3 (50-219)||(11337568-11337739)
chr3 (50-115)||(44064411-44064476)
chr3 (56-142)||(3985963-3986049)
chr3 (51-115)||(42571486-42571550)
chr3 (51-115)||(42886878-42886942)
chr3 (56-115)||(19115515-19115574)
chr3 (51-115)||(4759419-4759483)
chr3 (51-115)||(50038129-50038192)
[»] chr8 (10 HSPs)
chr8 (50-221)||(24245166-24245339)
chr8 (50-206)||(35233575-35233733)
chr8 (51-115)||(15160406-15160470)
chr8 (51-115)||(396174-396238)
chr8 (176-221)||(35468065-35468110)
chr8 (51-115)||(39765820-39765884)
chr8 (51-94)||(37559493-37559536)
chr8 (51-114)||(40362565-40362628)
chr8 (51-113)||(43724513-43724575)
chr8 (62-114)||(1511631-1511683)
[»] chr5 (11 HSPs)
chr5 (55-218)||(30868617-30868782)
chr5 (51-115)||(10344892-10344956)
chr5 (51-114)||(32158672-32158735)
chr5 (51-115)||(35765858-35765924)
chr5 (62-115)||(7317157-7317210)
chr5 (51-115)||(25362760-25362824)
chr5 (51-115)||(43584336-43584400)
chr5 (56-115)||(3024896-3024955)
chr5 (65-119)||(1780821-1780875)
chr5 (50-132)||(13974396-13974478)
chr5 (50-131)||(38369995-38370076)
[»] chr7 (15 HSPs)
chr7 (50-221)||(35778537-35778718)
chr7 (50-115)||(42286037-42286102)
chr7 (51-115)||(6747355-6747419)
chr7 (51-115)||(12977644-12977708)
chr7 (51-115)||(12983102-12983166)
chr7 (51-115)||(18292464-18292528)
chr7 (51-114)||(2297173-2297236)
chr7 (62-115)||(47187791-47187844)
chr7 (51-115)||(18270707-18270771)
chr7 (51-115)||(37502448-37502512)
chr7 (51-114)||(34274924-34274987)
chr7 (45-119)||(48102766-48102840)
chr7 (62-115)||(31883913-31883966)
chr7 (55-132)||(40339581-40339658)
chr7 (51-115)||(715821-715885)
[»] chr4 (8 HSPs)
chr4 (51-131)||(7905960-7906040)
chr4 (51-115)||(4505465-4505529)
chr4 (51-115)||(22220323-22220387)
chr4 (51-113)||(38510209-38510271)
chr4 (56-113)||(51733463-51733520)
chr4 (51-115)||(37624685-37624749)
chr4 (51-114)||(25231305-25231368)
chr4 (56-142)||(36558258-36558344)
[»] chr6 (8 HSPs)
chr6 (51-115)||(4850455-4850519)
chr6 (51-115)||(29400074-29400138)
chr6 (51-114)||(32429417-32429480)
chr6 (50-115)||(17552195-17552260)
chr6 (56-113)||(19689461-19689518)
chr6 (55-132)||(577184-577261)
chr6 (50-115)||(13503792-13503857)
chr6 (50-114)||(13597902-13597966)
[»] chr2 (9 HSPs)
chr2 (51-115)||(22620294-22620358)
chr2 (51-115)||(27986167-27986231)
chr2 (51-115)||(28072699-28072763)
chr2 (51-115)||(43427248-43427311)
chr2 (65-115)||(35799331-35799381)
chr2 (62-115)||(5717641-5717694)
chr2 (50-115)||(45423747-45423812)
chr2 (51-114)||(32022860-32022923)
chr2 (51-115)||(14286060-14286123)
[»] scaffold0010 (1 HSPs)
scaffold0010 (50-136)||(153425-153511)
[»] scaffold0332 (1 HSPs)
scaffold0332 (51-115)||(3770-3834)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 5601 - 5838
Alignment:
Q  1 agaaaatattgaaaggtgaatcataattttcttgattactttagaaagcttttacacacagattaaaaaat--gcaatgattagaataaagagaatagta 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  5601 agaaaatattgaaaggtgaatcataattttcttgattactttagaaagtttttacacacagattaaaaaatatgcaatgattagaataaagagaatagta 5700  T
Q  99 attttaccaaattatccctatcatctatttgtttctttaccactgtcataaatgcaaactaaaagtatggttttgagtagtgtatataggggtacaattg 198  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5701 attttaccaaattattcctatcatctatttgtttctttaccattgtcataaatgcaaact-aaagtatggttttgagtagtgtatataggggtacaattg 5799  T
Q  199 gaaagatgcgattaatatttcatatgaaattaacaaaag 237  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  5800 gaaagatgcgattaatatttcattggaaattaacaaaag 5838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 218
Target Start/End: Original strand, 44938529 - 44938698
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgtttctttaccactgtcataa 149  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||  |||||||||||||||| ||||||| || || |||||||||||||| ||||||    
T  44938529 ttttacacacatattaagaaatgcaatgattagaataaagagaataacaattttaccaaattat-cctatcaactgttggtttctttaccactatcataa 44938627  T
Q  150 atgcaaactaaaagtatggttttgagta--gtgtatataggggtacaattggaaagatgcgattaatattt 218  Q
    ||||||| ||||| ||  |||||| | |  ||||||||| ||||||||||||||||||| |||||||||||    
T  44938628 atgcaaagtaaaaataatgttttgggaacggtgtatataagggtacaattggaaagatgtgattaatattt 44938698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 14595 - 14687
Alignment:
Q  21 tcataattttcttgattactttagaaagcttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattat 113  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  14595 tcataattttcttgattactttagaaagtttttacacacatattaaaaaatgcaatgattagaagaaagaaaatagtagttttaccaaattat 14687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 34032038 - 34032102
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||| ||| |||||||||||||||||||| || ||||||||| || |||||||||||||||||    
T  34032038 tttacatacatattaaaaaatgcaatgattaaaagaaagagaatggttattttaccaaattatcc 34032102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 44257639 - 44257703
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || |||||||||| | |||||||||||||||||    
T  44257639 tttacacacatattaataaatgcaatgattaaaagaaagagaataattattttaccaaattatcc 44257703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 50249503 - 50249439
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || ||||||||| || |||||||||||||||||    
T  50249503 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatcc 50249439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 8565957 - 8565852
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgtttctttaccactgtcataa 149  Q
    ||||||||||| ||||| ||||||||| | ||||| || || |||||||||||||||||||||| | ||| | ||||| || | ||| ||||||||||||    
T  8565957 ttttacacacatattaagaaatgcaataaatagaagaa-gataatagtaattttaccaaattattcttattaactattggtgtgtttcccactgtcataa 8565859  T
Q  150 atgcaaa 156  Q
    | |||||    
T  8565858 acgcaaa 8565852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 14373371 - 14373435
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || ||| ||||| || |||||||||||||||||    
T  14373371 tttacacacatattaagaaatgcaatgattaaaagaaaaagaatggttattttaccaaattatcc 14373435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 52023931 - 52023995
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || |||||||||  | |||||||||||||||||    
T  52023931 tttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatcc 52023995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 14593308 - 14593383
Alignment:
Q  56 acacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgtt 131  Q
    ||||| ||||| |||||||||||||| || ||||| ||| || ||||||||||||||||| ||| | |||||||||    
T  14593308 acacatattaagaaatgcaatgattaaaaaaaagataatggttattttaccaaattatccttattaactatttgtt 14593383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 34047191 - 34047254
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatc 114  Q
    |||||||||| ||||| |||||||||||||| || |||||||||  | ||||||||||||||||    
T  34047191 tttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatc 34047254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 39125797 - 39125732
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    ||||||||||| ||||| |||||||||||||| || ||||||||| || ||||| | |||||||||    
T  39125797 ttttacacacatattaagaaatgcaatgattaaaagaaagagaattgttatttttctaaattatcc 39125732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 26352039 - 26352103
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| ||||||||| |||| || |||||||||  | |||||||||||||||||    
T  26352039 tttacacacatattaagaaatgcaattattaaaagaaagagaatgtttattttaccaaattatcc 26352103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 27721151 - 27721087
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| |||||||||||||||||||| || |||| ||||  | |||||| ||||||||||    
T  27721151 tttacacacatattaaaaaatgcaatgattaaaagaaagtgaatgattattttatcaaattatcc 27721087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 30293529 - 30293465
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||| | ||||| |||||||||||||| || ||||| ||| || |||||||||||||||||    
T  30293529 tttacacatatattaagaaatgcaatgattaaaagaaagataatggttattttaccaaattatcc 30293465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 12484585 - 12484650
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    ||||||||||| ||||| |||| ||| ||||| || ||||| ||| || |||||||||||||||||    
T  12484585 ttttacacacatattaagaaatacaaagattaaaagaaagataattgtcattttaccaaattatcc 12484650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 27721266 - 27721202
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    ||||| |||| ||||||||||||||| |||| || |||||||||  | |||||| ||||||||||    
T  27721266 tttacgcacatattaaaaaatgcaataattaaaagaaagagaatgattattttatcaaattatcc 27721202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 44557016 - 44557080
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatc 114  Q
    ||||| ||||| ||||||||||||| | |||| || ||||||||  || ||||||||||||||||    
T  44557016 ttttatacacatattaaaaaatgcattaattaaaagaaagagaaatgttattttaccaaattatc 44557080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 11337568 - 11337739
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgtttctttaccactgtcataa 149  Q
    ||||||||||| ||||  ||||||||||||||||| |||| |||||||||||||||||||||||||| |||| ||||| |||||||||| ||| ||||||    
T  11337568 ttttacacacatattatgaaatgcaatgattagaagaaagggaatagtaattttaccaaattatccccatcaactattggtttctttactactatcataa 11337667  T
Q  150 atgcaaactaaaagtatggtttt--gagtagtgtatataggggtacaattggaaagatgcgattaatatttc 219  Q
    |||  || ||||||||  |||||  ||||||| |||||| ||||| || ||||||| || ||||||||||||    
T  11337668 atgtgaagtaaaagtaatgttttgggagtagtttatataagggtataactggaaaggtgtgattaatatttc 11337739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 44064411 - 44064476
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    ||||||||||| ||||| |||||||||||||| || |||||||||  | |||||||||||||||||    
T  44064411 ttttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatcc 44064476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 3986049 - 3985963
Alignment:
Q  56 acacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgtttctttaccact 142  Q
    ||||| ||||| |||||||||||||| || |||||||||  | ||||||||||||||||| ||| | ||||| |||| ||| |||||    
T  3986049 acacacattaagaaatgcaatgattaaaagaaagagaatttttattttaccaaattatccttattaactattggtttgttttccact 3985963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 42571486 - 42571550
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || | ||||||| || |||||| ||||||||||    
T  42571486 tttacacacatattaagaaatgcaatgattaaaagatagagaatggttattttatcaaattatcc 42571550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 42886942 - 42886878
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||| ||| ||||| || ||||||||||| || ||||||||| || |||||||||||||||||    
T  42886942 tttacaaacatattaagaactgcaatgattaaaagaaagagaattgttattttaccaaattatcc 42886878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 19115574 - 19115515
Alignment:
Q  56 acacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    ||||| ||||| |||||||||||||| || ||| ||||| || |||||||||||||||||    
T  19115574 acacatattaagaaatgcaatgattaaaagaaaaagaatggttattttaccaaattatcc 19115515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 4759483 - 4759419
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||| ||||| ||||| ||| |||||||||| || |||| |||| || |||||||||||||||||    
T  4759483 tttatacacatattaagaaaagcaatgattaaaagaaagcgaatggttattttaccaaattatcc 4759419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 50038129 - 50038192
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| ||  ||||||||  | |||||||||||||||||    
T  50038129 tttacacacatattaagaaatgcaatgatta-aaagaagagaatgattattttaccaaattatcc 50038192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 24245166 - 24245339
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgtttctttaccactgtcataa 149  Q
    ||||||||||| ||||| |||| |||||||||||| |||| ||||||||||||||||||||||||||||||| || || ||||| |||  | | | ||||    
T  24245166 ttttacacacatattaagaaatccaatgattagaaaaaagggaatagtaattttaccaaattatccctatcaacttttggtttccttaatattataataa 24245265  T
Q  150 atgcaaactaaaagtatggttttg--agtagtgtatataggggtacaattggaaagatgcgattaatatttcat 221  Q
    || |||| ||||||||  ||||||  |||||||||| |||||||||| ||||||||||| ||||| ||||||||    
T  24245266 atacaaagtaaaagtaatgttttggaagtagtgtatgtaggggtacagttggaaagatgtgattagtatttcat 24245339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 35233733 - 35233575
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgtttctttaccactgtcataa 149  Q
    ||||||||||| ||||| |||| |||||||||||| |||||||||||| ||||||||||| ||||||||| |  ||||  | |||||   ||| ||||||    
T  35233733 ttttacacacacattaagaaatacaatgattagaagaaagagaatagtcattttaccaaactatccctataaaatattgatgtcttttttactatcataa 35233634  T
Q  150 atgcaaactaaaagtatggtttt--gagtagtgtatataggggtacaattggaaagatg 206  Q
    ||||||| ||||||||   ||||  |||||||||||||||||||||||||| |||||||    
T  35233633 atgcaaagtaaaagtactattttgggagtagtgtatataggggtacaattgaaaagatg 35233575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 15160406 - 15160470
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || ||||||||| || |||||||||||||||||    
T  15160406 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatcc 15160470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 396174 - 396238
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || |||||||||  | |||||||||||||||||    
T  396174 tttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatcc 396238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 35468065 - 35468110
Alignment:
Q  176 tagtgtatataggggtacaattggaaagatgcgattaatatttcat 221  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||    
T  35468065 tagtgtatataagggtacaattggaaagatgtaattaatatttcat 35468110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 39765820 - 39765884
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||| ||||||||| || |||||||||  | |||||||||||||||||    
T  39765820 tttacacacatattaagaaatacaatgattaaaagaaagagaatgcttattttaccaaattatcc 39765884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 37559493 - 37559536
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaat 94  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||    
T  37559493 tttacacacatattaagaaatgcaatgattaaaataaagagaat 37559536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 40362628 - 40362565
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatc 114  Q
    |||||||| | ||||| |||||||||| |||||| |||||||||  | ||||||||||||||||    
T  40362628 tttacacatatattaagaaatgcaatgcttagaaaaaagagaatgcttattttaccaaattatc 40362565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 43724575 - 43724513
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattat 113  Q
    |||||||||  | |||||||||||||||||| || |||||||||  | |||||||||||||||    
T  43724575 tttacacacgtactaaaaaatgcaatgattaaaagaaagagaatgattattttaccaaattat 43724513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 1511683 - 1511631
Alignment:
Q  62 attaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatc 114  Q
    ||||| |||||||||||||| || ||||||||| || ||||||| ||||||||    
T  1511683 attaagaaatgcaatgattataagaaagagaattgtcattttactaaattatc 1511631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 30868617 - 30868782
Alignment:
Q  55 cacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgtttctttaccactgtcataaatgca 154  Q
    |||||| ||||  |||| |||||||||| | |||  | |||| |||||||||||||||| ||||||| |||||  ||||||||| ||| |||||||||||    
T  30868617 cacacatattagtaaatccaatgattagtagaaatgggataggaattttaccaaattatgcctatcaactattcatttctttactactatcataaatgca 30868716  T
Q  155 aactaaaagtatggtttt--gagtagtgtatataggggtacaattggaaagatgcgattaatattt 218  Q
    || ||||||||  |||||  |||||||||||||||| ||| ||||||||||||| |||||| ||||    
T  30868717 aagtaaaagtaatgttttgggagtagtgtatataggagtaaaattggaaagatgtgattaacattt 30868782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 10344892 - 10344956
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || ||||||||| || |||||||||||||||||    
T  10344892 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatcc 10344956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 32158735 - 32158672
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatc 114  Q
    |||||||||| ||||| |||||||||||||| || ||||||||| || ||||||||||||||||    
T  32158735 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatc 32158672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 35765858 - 35765924
Alignment:
Q  51 tttacacacagattaaaa--aatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| |||||||  ||||||||||||| || ||||||||| || |||||||||||||||||    
T  35765858 tttacacacatattaaaaaaaatgcaatgattaaaagaaagagaatggttattttaccaaattatcc 35765924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 7317210 - 7317157
Alignment:
Q  62 attaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    ||||| |||||||||||||| || ||||||||| || |||||||||||||||||    
T  7317210 attaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatcc 7317157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 25362760 - 25362824
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || ||||||||| ||  |||||||||| |||||    
T  25362760 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttgttttaccaaaatatcc 25362824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 43584336 - 43584400
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||| ||||||||| || |||||||||  | |||||||||||||||||    
T  43584336 tttacacacatattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatcc 43584400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 3024896 - 3024955
Alignment:
Q  56 acacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    ||||| ||||| |||||||| ||||| || ||||||||| || |||||||||||||||||    
T  3024896 acacacattaagaaatgcaacgattaaaagaaagagaatggttattttaccaaattatcc 3024955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 1780875 - 1780821
Alignment:
Q  65 aaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctat 119  Q
    |||||||| |||||||| || |||||||||||||| |||| ||||||||| ||||    
T  1780875 aaaaaatgtaatgattaaaagaaagagaatagtaactttatcaaattatctctat 1780821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 13974478 - 13974396
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgttt 132  Q
    ||||||||||| ||||| ||||||| | |||| || |||||||   || |||||||||||||||||  |||| ||||||||||    
T  13974478 ttttacacacatattaagaaatgcattaattaaaagaaagagaggtgttattttaccaaattatcctaatcaactatttgttt 13974396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 38370076 - 38369995
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgtt 131  Q
    ||||||||| | ||||| ||||||| | |||| ||||||||||   || |||||||||||||||||  |||| |||||||||    
T  38370076 ttttacacatatattaataaatgcattaattaaaataaagagatatgttattttaccaaattatcctaatcaactatttgtt 38369995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 35778718 - 35778537
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgtttctt--------taccac 141  Q
    ||||||||| |  |||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| ||||| |||||||        ||| ||    
T  35778718 ttttacacatatgttaagaaatgcattgattagaataaagtgaatagtaattttaccaaattatccctttcaactattggtttctttactacaatactac 35778619  T
Q  142 tgtcataaatgcaaactaaaagtatggttttg--agtagtgtatataggggtacaattggaaagatgcgattaatatttcat 221  Q
    | ||||||||||| |  |||||||   |||||  |||||||||||||||||||||||||||||  || ||||||||||||||    
T  35778618 tatcataaatgcataggaaaagtaatattttggaagtagtgtatataggggtacaattggaaatttgtgattaatatttcat 35778537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 42286102 - 42286037
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    ||||||| ||| ||||| |||||||||||||| |||||||||||| || |||||||||||||||||    
T  42286102 ttttacaaacatattaagaaatgcaatgattaaaataaagagaattgttattttaccaaattatcc 42286037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 6747419 - 6747355
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || ||||||||| || |||||||||||||||||    
T  6747419 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatcc 6747355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 12977644 - 12977708
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || ||||||||| || |||||||||||||||||    
T  12977644 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatcc 12977708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 12983102 - 12983166
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || ||||||||| || |||||||||||||||||    
T  12983102 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatcc 12983166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 18292528 - 18292464
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || ||||||||| || |||||||||||||||||    
T  18292528 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatcc 18292464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 2297236 - 2297173
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatc 114  Q
    |||||||||| ||||| |||||||||||||| || |||||||||  | ||||||||||||||||    
T  2297236 tttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatc 2297173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 47187844 - 47187791
Alignment:
Q  62 attaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    ||||||||||||| |||||| || ||||||||| || |||||||||||||||||    
T  47187844 attaaaaaatgcattgattaaaagaaagagaattgttattttaccaaattatcc 47187791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 18270771 - 18270707
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || ||| |||||  | |||||||||||||||||    
T  18270771 tttacacacatattaagaaatgcaatgattaaaagaaatagaatgattattttaccaaattatcc 18270707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 37502512 - 37502448
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||| ||||||||| || |||||||||  | |||||||||||||||||    
T  37502512 tttacacacatattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatcc 37502448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 34274987 - 34274924
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatc 114  Q
    ||||||| || ||||| |||| ||||||||| || ||||||||| || ||||||||||||||||    
T  34274987 tttacacgcatattaagaaatacaatgattaaaagaaagagaatggttattttaccaaattatc 34274924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 48102766 - 48102840
Alignment:
Q  45 aaagcttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctat 119  Q
    |||| ||||||| ||| || ||||||| |||||||||||| ||| |||| ||| |||||| |||| |||||||||    
T  48102766 aaagtttttacatacatatcaaaaaatacaatgattagaagaaaaagaacagtcattttatcaaaatatccctat 48102840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 31883966 - 31883913
Alignment:
Q  62 attaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    ||||| |||||||||||||| || |||||||||  | |||||||||||||||||    
T  31883966 attaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatcc 31883913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 40339658 - 40339581
Alignment:
Q  55 cacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgttt 132  Q
    |||||||||||| ||||||| | |||| || ||||||||  || |||||||||||||||||  |||| ||||| ||||    
T  40339658 cacacagattaagaaatgcattaattaaaagaaagagaaatgttattttaccaaattatcctaatcaactattggttt 40339581  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 715821 - 715885
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||| | ||||| |||||||||||||| || ||||| |||  | |||||||||||||||||    
T  715821 tttacacatatattaagaaatgcaatgattaaaagaaagaaaatcattattttaccaaattatcc 715885  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 7905960 - 7906040
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgtt 131  Q
    |||||||||| ||||| |||||||||||||| || ||||||||| || ||||||||||||||||| ||| | |||||||||    
T  7905960 tttacacacatattaagaaatgcaatgattaaaagaaagagaattgttattttaccaaattatccttattaactatttgtt 7906040  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 4505529 - 4505465
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||| ||| ||||| |||||||||||||| || ||||||||| || |||||||||||||||||    
T  4505529 tttacaaacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatcc 4505465  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 22220323 - 22220387
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || || |||||| || |||||||||||||||||    
T  22220323 tttacacacatattaagaaatgcaatgattaaaagaatgagaatggttattttaccaaattatcc 22220387  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 38510209 - 38510271
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattat 113  Q
    |||||||||| |||||||||||||||||||| || ||| ||||  || |||||||||||||||    
T  38510209 tttacacacatattaaaaaatgcaatgattaaaagaaaaagaaaggttattttaccaaattat 38510271  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 51733463 - 51733520
Alignment:
Q  56 acacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattat 113  Q
    ||||| ||||| |||||||||||||| || ||||||||| || |||||||||||||||    
T  51733463 acacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattat 51733520  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 37624749 - 37624685
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    ||||||| || ||||| |||||||||||||| || |||||||||  | |||||||||||||||||    
T  37624749 tttacactcatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatcc 37624685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 25231368 - 25231305
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatc 114  Q
    |||||||||| ||||| |||||||||||||| || |||||||||  | |||||| |||||||||    
T  25231368 tttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttatcaaattatc 25231305  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 36558258 - 36558344
Alignment:
Q  56 acacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgtttctttaccact 142  Q
    ||||| ||||| |||||||||||||| || ||||| |||  | ||||||||||||||||| ||| | ||||| |||| ||| |||||    
T  36558258 acacacattaagaaatgcaatgattaaaagaaagataatttttattttaccaaattatccttattaactattggtttgttttccact 36558344  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 4850455 - 4850519
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || ||||||||| || |||||||||||||||||    
T  4850455 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatcc 4850519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 29400138 - 29400074
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || ||||||||| || |||||||||||||||||    
T  29400138 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatcc 29400074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 32429480 - 32429417
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatc 114  Q
    |||||||||| ||||| |||||||||||||| || |||||||||  | ||||||||||||||||    
T  32429480 tttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatc 32429417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 17552195 - 17552260
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||||||||||||||| || | |||| || |||||||   ||||||||||||||||||||    
T  17552195 ttttacacacagattaaaaaatacattaattaaaagaaagagagatgtaattttaccaaattatcc 17552260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 19689518 - 19689461
Alignment:
Q  56 acacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattat 113  Q
    ||||| |||||||||||||||||||| || ||||| ||| || |||||||||||||||    
T  19689518 acacatattaaaaaatgcaatgattaaaagaaagataatggttattttaccaaattat 19689461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 577261 - 577184
Alignment:
Q  55 cacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgttt 132  Q
    |||||||||||| ||||||| | |||| |||||||||||  || ||||||| |||||||||  |||| ||||| ||||    
T  577261 cacacagattaagaaatgcattaattaaaataaagagaaatgttattttactaaattatcctaatcaactattggttt 577184  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 13503792 - 13503857
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    ||||||||||| ||||| ||||||| | |||| || ||||||||  || |||||||||||||||||    
T  13503792 ttttacacacatattaagaaatgcattaattaaaagaaagagaaatgttattttaccaaattatcc 13503857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 13597902 - 13597966
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatc 114  Q
    ||||||||||| ||||| ||||| || || || || ||||||||| || ||||||||||||||||    
T  13597902 ttttacacacatattaagaaatgtaaggaataaaagaaagagaattgttattttaccaaattatc 13597966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 22620294 - 22620358
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| |||||||||||||||||||| || ||||||||| || ||||||| |||||||||    
T  22620294 tttacacacatattaaaaaatgcaatgattaaaagaaagagaatggttattttactaaattatcc 22620358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 27986231 - 27986167
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| ||||||||| |||| |||||||||||| || |||||||||||||||||    
T  27986231 tttacacacatattaagaaatgcaattattaaaataaagagaatggttattttaccaaattatcc 27986167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 28072763 - 28072699
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| ||||||||| |||| |||||||||||| || |||||||||||||||||    
T  28072763 tttacacacatattaagaaatgcaattattaaaataaagagaatggttattttaccaaattatcc 28072699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 43427248 - 43427311
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| ||||||||| |||| |||||||||||| || |||||||||||||||||    
T  43427248 tttacacacatattaagaaatgcaat-attaaaataaagagaatggttattttaccaaattatcc 43427311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 35799381 - 35799331
Alignment:
Q  65 aaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||    
T  35799381 aaaaaatgcaatgattaaaagaaagagaatggttattttaccaaattatcc 35799331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 5717694 - 5717641
Alignment:
Q  62 attaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||||||||||||| || |||||||||  | |||||||||||||||||    
T  5717694 attaaaaaatgcaatgattaaaagaaagagaatgattattttaccaaattatcc 5717641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 45423812 - 45423747
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    ||||||||||| ||||| ||||| |||||||| |||||| |||||  | |||||||||||||||||    
T  45423812 ttttacacacatattaagaaatgaaatgattaaaataaatagaattattattttaccaaattatcc 45423747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 32022860 - 32022923
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatc 114  Q
    |||||||||| ||||| ||||| |||||||| || |||||||||  | ||||||||||||||||    
T  32022860 tttacacacatattaagaaatgtaatgattaaaagaaagagaatgattattttaccaaattatc 32022923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 14286123 - 14286060
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| ||||| |||||||||||||| || |||||| ||| | |||||| ||||||||||    
T  14286123 tttacacacatattaagaaatgcaatgattaaaagaaagaggata-ttattttatcaaattatcc 14286060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 153511 - 153425
Alignment:
Q  50 ttttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatccctatcatctatttgtttcttt 136  Q
    ||||||||| | ||||| ||||||||||| ||||| |||||||||| | |||||| ||||||||||  || | ||||| ||||||||    
T  153511 ttttacacatatattaagaaatgcaatgactagaagaaagagaataattattttatcaaattatcctcattaactattggtttcttt 153425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 3770 - 3834
Alignment:
Q  51 tttacacacagattaaaaaatgcaatgattagaataaagagaatagtaattttaccaaattatcc 115  Q
    |||||||||| | ||| |||||||||||||| || ||||| |||  | |||||||||||||||||    
T  3770 tttacacacataataagaaatgcaatgattaaaagaaagaaaatgattattttaccaaattatcc 3834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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