View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4000_high_11 (Length: 251)
Name: NF4000_high_11
Description: NF4000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4000_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 3358514 - 3358666
Alignment:
| Q |
11 |
ttattctcaactaacctaagaatataccttattatttttaataataaattttttatattgagctgtgatatttgtacaactattttctgataagttttgg |
110 |
Q |
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| T |
3358514 |
ttattatcaactaaccaaagaatataccttaatatttttagtaaggaattttttatattgagttgtgatatttgtacaattattttttgataagttttgg |
3358613 |
T |
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| Q |
111 |
aactctattttcttattggaacaaccttcgtattcttattgcttaataaatag |
163 |
Q |
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| T |
3358614 |
aactctattttcttattggaacaaccttcgtattcttattgcttaataaatag |
3358666 |
T |
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