View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4000_high_15 (Length: 234)
Name: NF4000_high_15
Description: NF4000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4000_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 8291025 - 8291216
Alignment:
| Q |
9 |
gagcagcacagacattccttctaagcacttgacctagacttccaaatctgtttcaatggtaatttctaccaagtgatttgaagctaggatccagctaatg |
108 |
Q |
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| T |
8291025 |
gagcatcacaaacattccttctaagcacttgacctagacttccaaatctgtttcaatggtaatttctaccaagtgatttgaagctaggatccagct---- |
8291120 |
T |
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| Q |
109 |
caccatctcagcggatagcttcaaccaatgttggagaagctttgatcttctctatgtgagtaacagcaaactcaaccattccaagctgatttctcatgat |
208 |
Q |
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| T |
8291121 |
------------tgatagcttcaacaaatgttggagaagctttgatcttctctatgtgagtaacagcaaacttaaccattccaagctgatttctcatgat |
8291208 |
T |
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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 215
Target Start/End: Original strand, 33633859 - 33634048
Alignment:
| Q |
23 |
ttccttctaagcacttgacctagacttccaaatctgtttcaatggtaatttctaccaagtgatttgaagctaggatccagctaatgcaccatctcag-cg |
121 |
Q |
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||||||||||||| ||||| ||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| || |
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| T |
33633859 |
ttccttctaagcatttgacagtgacttccgaatctgattcaatggtaatttctttcaagtgatttgaagctaggatcctgctaa---accatcttagtac |
33633955 |
T |
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| Q |
122 |
gatagcttcaaccaatgttggagaagctttgatcttctctatgtgagtaacagcaaactcaaccattccaagctgatttctcatgataaaaccc |
215 |
Q |
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| T |
33633956 |
catagactcagccaatgttggagaaactttgatcttctct-tgtatgtaacagcaaactcggctattccaaggtgatttctcatgatcaaaccc |
33634048 |
T |
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