View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4000_low_1 (Length: 761)
Name: NF4000_low_1
Description: NF4000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4000_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 682; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 1 - 751
Target Start/End: Complemental strand, 37417193 - 37416443
Alignment:
| Q |
1 |
ttaatcgctttgagttctacaatttgatcagggtgttgtactttgaaatatgagtggaaaatcttggttaaaagcgcttggacaatatcagggagctttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37417193 |
ttaatcgctttgagttctacaatttgatcagggtgttgtactttgaaatatgagtggaaaatcttggttaaaagcgcttggacaatatcaggcagctttt |
37417094 |
T |
|
| Q |
101 |
gatgaaaacggcaacttagttttttcgtatatttttactattggaaaaactgtgatgacaatttctgttggaaataatgctgtcaagtcatttgaggtgt |
200 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37417093 |
gatgaaaacggcaacttagttttttcttatatttttactattggaaaaactgtgatgacaatttctgttggaaataatgctgtcaagtcatttgaggtgt |
37416994 |
T |
|
| Q |
201 |
ttggaacacctctggattgtgtcattagcattatgtgagtccttgttgaacaacaaaatttcattctctaataatttggtaatgaaatttgtgcaagtct |
300 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37416993 |
ttggaacacttgtggattgtgtcattagcattatgtgagtccttgttgaacaacaaaatttcattctctaataatttggtaatgaaatttgtgcaagtct |
37416894 |
T |
|
| Q |
301 |
tgtctgcatctaagaaaaatggtctttatcatgctaaagattccatcttggtgggtataactgaatttgaaaaatgccttgtggacattggattgtactt |
400 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37416893 |
tgtatgcatctaagaaaaatggtctttatcatgctaaagattccatcttggtgggtataactgaatttgaaaaatgccttgtggacattggattgtactt |
37416794 |
T |
|
| Q |
401 |
tcaaaattggttatgtagagacaataaagttggttgtttctacacttgcttccattctatagatgctcttcacacaccatttgcaaatttattagctgac |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37416793 |
tcaaaattggttatgtagagacaataaagttggttgtttctacacttgcttccattctatagatgctcttcacacaccatttgcaaatttattagctgac |
37416694 |
T |
|
| Q |
501 |
tcatgacatgctagaacacttgggaacattggaatatctgtaaatgctcgttactcttgcacattcatgtcagaagatgcttttagcattcttaaagaac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37416693 |
tcatgacatgctagaacacttgggaacattggaatatcagtaaatgcttgttactcttgcacattcatgtcagaagatgcctttagcattcttaaagaac |
37416594 |
T |
|
| Q |
601 |
ggnnnnnnntactagtttctatgacgacacggtagctgcatcattaacagaaagatatgagtggatgagacagtcccctttgaggaaacaaataatacac |
700 |
Q |
| |
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| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37416593 |
tgaaaaaaatactagtttctatgacgacacggtagctgcatcgttaacagaaagatatgagtggatgagacagtcccctctgaggaaacaaataatacac |
37416494 |
T |
|
| Q |
701 |
agctcttgcaaacttgattttttgtttgactattatttttcccaccctatg |
751 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
37416493 |
agctcttgcaaacttgattttttgtttgactattacttttcccaccctatg |
37416443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 1 - 751
Target Start/End: Complemental strand, 37424725 - 37423975
Alignment:
| Q |
1 |
ttaatcgctttgagttctacaatttgatcagggtgttgtactttgaaatatgagtggaaaatcttggttaaaagcgcttggacaatatcagggagctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37424725 |
ttaatcgctttgagttctacaatttgatcagggtgttgtactttgaaatatgagtgaaaaatcttggttaaaagcgcttggacaatatcaggcagctttt |
37424626 |
T |
|
| Q |
101 |
gatgaaaacggcaacttagttttttcgtatatttttactattggaaaaactgtgatgacaatttctgttggaaataatgctgtcaagtcatttgaggtgt |
200 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37424625 |
gatgaaaacggcaacttagttttttcatatatttttactattggaaaaactgtgatgacaaattctgttggaaataatgctgtcaagtcatttgaggtgt |
37424526 |
T |
|
| Q |
201 |
ttggaacacctctggattgtgtcattagcattatgtgagtccttgttgaacaacaaaatttcattctctaataatttggtaatgaaatttgtgcaagtct |
300 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37424525 |
ttggaacacttgtggattgtgtcattagcattatgtaagtccttgttgaacaacaaaatttcattctctaataatttggtaatgaaatttgtgcaagtct |
37424426 |
T |
|
| Q |
301 |
tgtctgcatctaagaaaaatggtctttatcatgctaaagattccatcttggtgggtataactgaatttgaaaaatgccttgtggacattggattgtactt |
400 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37424425 |
tgtatgcatctaagaaaaatggtctttatcatgctaaagattccatcttggtgggtataactgaatttgaaaaatgccttgtggacattggattgtactt |
37424326 |
T |
|
| Q |
401 |
tcaaaattggttatgtagagacaataaagttggttgtttctacacttgcttccattctatagatgctcttcacacaccatttgcaaatttattagctgac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37424325 |
tcaaaattggttatgtagagacaataaagttggttgtttctacacttgcttccattctatagatgctcttcacacaccatttgcaaatttattagctgac |
37424226 |
T |
|
| Q |
501 |
tcatgacatgctagaacacttgggaacattggaatatctgtaaatgctcgttactcttgcacattcatgtcagaagatgcttttagcattcttaaagaac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37424225 |
tcatgacatgctagaacacttgggaacattggaatatcagtaaatgcttgttactcttgcacattcatgtcagaagatgcctttagcattcttaaagaac |
37424126 |
T |
|
| Q |
601 |
ggnnnnnnntactagtttctatgacgacacggtagctgcatcattaacagaaagatatgagtggatgagacagtcccctttgaggaaacaaataatacac |
700 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37424125 |
tgaaaaaaatactagtttctatgacgacacggtagctgcatcgttaacagaaagatatgagtggatgagacagtcccctatgaggaaacaaataatacac |
37424026 |
T |
|
| Q |
701 |
agctcttgcaaacttgattttttgtttgactattatttttcccaccctatg |
751 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
37424025 |
agctcttgcaaacttgattttttgtttgactattacttttcccaccctatg |
37423975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 8573811 - 8573759
Alignment:
| Q |
221 |
gtcattagcattatgtgagtccttgttgaacaacaaaatttcattctctaata |
273 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||||||||| |||||||||||| |
|
|
| T |
8573811 |
gtcattagcattacatgagcccttgttgaccaacaaaattgcattctctaata |
8573759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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