View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4000_low_10 (Length: 273)

Name: NF4000_low_10
Description: NF4000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4000_low_10
NF4000_low_10
[»] chr4 (14 HSPs)
chr4 (133-273)||(3258560-3258700)
chr4 (18-138)||(3267441-3267561)
chr4 (19-120)||(3258463-3258564)
chr4 (147-202)||(3258400-3258455)
chr4 (101-202)||(30564111-30564212)
chr4 (216-273)||(3267556-3267613)
chr4 (101-202)||(17359794-17359894)
chr4 (123-199)||(19725135-19725211)
chr4 (124-195)||(24490335-24490406)
chr4 (74-112)||(29085937-29085975)
chr4 (124-177)||(10120302-10120355)
chr4 (124-177)||(10120530-10120583)
chr4 (109-170)||(29237084-29237145)
chr4 (101-157)||(8029704-8029760)
[»] chr1 (4 HSPs)
chr1 (94-195)||(50098745-50098846)
chr1 (84-157)||(4632619-4632692)
chr1 (102-198)||(25187974-25188070)
chr1 (124-178)||(39747005-39747059)
[»] chr2 (6 HSPs)
chr2 (62-170)||(39543197-39543305)
chr2 (57-149)||(39542194-39542286)
chr2 (111-157)||(160348-160394)
chr2 (19-97)||(160391-160469)
chr2 (101-157)||(31327430-31327486)
chr2 (101-157)||(31334151-31334207)
[»] chr7 (6 HSPs)
chr7 (48-165)||(24169696-24169813)
chr7 (75-126)||(20932351-20932402)
chr7 (124-194)||(7874816-7874887)
chr7 (124-202)||(47761922-47762000)
chr7 (92-169)||(20932414-20932491)
chr7 (101-157)||(26286506-26286562)
[»] chr3 (8 HSPs)
chr3 (18-199)||(26707072-26707252)
chr3 (78-169)||(1640282-1640372)
chr3 (74-130)||(1640223-1640279)
chr3 (124-170)||(25023642-25023688)
chr3 (124-177)||(20810693-20810746)
chr3 (124-202)||(795124-795202)
chr3 (124-177)||(38436679-38436732)
chr3 (101-177)||(6025484-6025560)
[»] chr5 (3 HSPs)
chr5 (89-195)||(28221685-28221791)
chr5 (102-172)||(31987052-31987122)
chr5 (101-157)||(35679250-35679306)
[»] scaffold0067 (1 HSPs)
scaffold0067 (101-202)||(33663-33764)
[»] chr6 (9 HSPs)
chr6 (101-172)||(5600669-5600740)
chr6 (109-170)||(5740545-5740607)
chr6 (101-195)||(11956401-11956495)
chr6 (133-177)||(10485392-10485436)
chr6 (124-202)||(3902570-3902647)
chr6 (124-177)||(17281286-17281339)
chr6 (132-177)||(19478469-19478514)
chr6 (101-157)||(12689663-12689719)
chr6 (124-172)||(17290084-17290132)
[»] scaffold0027 (1 HSPs)
scaffold0027 (94-195)||(43406-43507)
[»] chr8 (5 HSPs)
chr8 (133-177)||(33848328-33848372)
chr8 (124-177)||(33616447-33616500)
chr8 (124-172)||(19430338-19430386)
chr8 (124-172)||(19566487-19566535)
chr8 (109-157)||(42157593-42157641)
[»] scaffold0054 (1 HSPs)
scaffold0054 (94-157)||(26133-26196)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 3258700 - 3258560
Alignment:
Q  133 aactctccttataaaaggagagctcgcctcactcattcttcacactaaaaaacacagttgatgtttcatgatattttttattagttaaattcttaaccaa 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  3258700 aactctccttataaaaggagagctcgcctcactcattcttcacactgaaaaacacaattgatgtttcatgatattttttatcagttaaattcttaaccaa 3258601  T
Q  233 aaaagttttgttataatccaatccaactgaatatccggaaa 273  Q
    | |||||| ||||||||||||||||||  ||||||||||||    
T  3258600 ataagtttcgttataatccaatccaacataatatccggaaa 3258560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 3267561 - 3267441
Alignment:
Q  18 tggaaagttctggatatatccactcacgagaaaacaaattcgcggattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3267561 tggaaagttctggatatatccactcacgagaaaacaaattcgcggattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgc 3267462  T
Q  118 tccaaatttgttatgaactct 138  Q
    |||| |||||||| |||||||    
T  3267461 tccagatttgttacgaactct 3267441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 3258564 - 3258463
Alignment:
Q  19 ggaaagttctggatatatccactcacgagaaaacaaattcgcggattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3258564 ggaaagttctggatatatccactcacgagaaaacaaattcgcggattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgct 3258465  T
Q  119 cc 120  Q
    ||    
T  3258464 cc 3258463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 3258455 - 3258400
Alignment:
Q  147 aaggagagctcgcctcactcattcttcacactaaaaaacacagttgatgtttcatg 202  Q
    |||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  3258455 aaggagagttcgcctcactcattcttcacactgaaaaacacatttgatgtttcatg 3258400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 30564111 - 30564212
Alignment:
Q  101 cttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacactaaaaaacacagttgatgtttca 200  Q
    ||||||||||||||| |||    ||||||| ||||||||| ||||||||||||||||| | ||||||||||| ||||  |||  ||||||||||| ||||    
T  30564111 cttaatccttaagtcactcgttttttgttacgaactctccctataaaaggagagctcgtcccactcattctttacaccgaaattcacagttgatgattca 30564210  T
Q  201 tg 202  Q
    ||    
T  30564211 tg 30564212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 3267613 - 3267556
Alignment:
Q  216 gttaaattcttaaccaaaaaagttttgttataatccaatccaactgaatatccggaaa 273  Q
    |||||||||||||||||| |||||| | |||||||||||||||| ||||||| |||||    
T  3267613 gttaaattcttaaccaaataagtttcgatataatccaatccaacagaatatctggaaa 3267556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 17359894 - 17359794
Alignment:
Q  101 cttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacactaaaaaacacagttgatgtttca 200  Q
    ||||||||||||||| ||||   ||||||| ||||||||  ||||||||||||| |||||||||| ||| || ||||| |||  | ||||||||||||||    
T  17359894 cttaatccttaagtcactccggttttgttacgaactctcactataaaaggagagttcgcctcacttattattgacactgaaattc-cagttgatgtttca 17359796  T
Q  201 tg 202  Q
    ||    
T  17359795 tg 17359794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 19725211 - 19725135
Alignment:
Q  123 atttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacactaaaaaacacagttgatgtttc 199  Q
    |||||||| ||||||||| |||||| ||| ||||||||||||| ||| | |||||  ||||| ||||||||||||||    
T  19725211 atttgttacgaactctccctataaatggaaagctcgcctcacttattttacacaccgaaaaatacagttgatgtttc 19725135  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 24490406 - 24490335
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacactaaaaaacacagttgatg 195  Q
    ||||||| ||||||||| ||||||||||||||| ||  ||||||||||||||||  |||  |||||||||||    
T  24490406 tttgttacgaactctccctataaaaggagagcttgctccactcattcttcacaccgaaattcacagttgatg 24490335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 29085975 - 29085937
Alignment:
Q  74 attaagtttgcttaatccgcaagttagcttaatccttaa 112  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  29085975 attaagtttgtttaatccgcaaattagcttaatccttaa 29085937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 10120302 - 10120355
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacac 177  Q
    ||||||| ||||||| | ||||||||||||||||||| | |||||||| |||||    
T  10120302 tttgttacgaactcttcctataaaaggagagctcgcccccctcattctacacac 10120355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 10120530 - 10120583
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacac 177  Q
    ||||||| ||||||| | ||||||||||||||||||| | |||||||| |||||    
T  10120530 tttgttacgaactcttcctataaaaggagagctcgcccccctcattctacacac 10120583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 29237145 - 29237084
Alignment:
Q  109 ttaagtcgctccaaatttgttatgaactctccttataaaaggagagctcgcctcactcattc 170  Q
    |||||||||| |  ||| |||| ||| ||||| |||||||||||||||||| ||||||||||    
T  29237145 ttaagtcgcttcggattcgttacgaaatctccctataaaaggagagctcgcttcactcattc 29237084  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 8029704 - 8029760
Alignment:
Q  101 cttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctc 157  Q
    |||||| |||||||  ||||||||| ||||  |||||||| ||||||||||||||||    
T  8029704 cttaattcttaagtttctccaaattagttacaaactctccctataaaaggagagctc 8029760  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 50098745 - 50098846
Alignment:
Q  94 aagttagcttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacactaaaaaacacagttga 193  Q
    ||||| |||||||||||||||| ||||  ||||||||  |||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  50098745 aagtttgcttaatccttaagtcactccggatttgttacaaactctccttataaaaggagagcttgcctcactcattcttcagactgaaaaacacagttga 50098844  T
Q  194 tg 195  Q
    ||    
T  50098845 tg 50098846  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 4632619 - 4632692
Alignment:
Q  84 cttaatccgcaagttagcttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctc 157  Q
    |||||||||||||||| |||||||||||||||||| |  |||||||| ||||||||| ||||||||| ||||||    
T  4632619 cttaatccgcaagttaacttaatccttaagtcgcttcggatttgttacgaactctccctataaaaggggagctc 4632692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 25187974 - 25188070
Alignment:
Q  102 ttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacactaaaaaacacagttgatgttt 198  Q
    |||||||||||||| |||| | ||||||| ||||||||  |||||||||||||||||| || || |||||| ||||  ||||| |||||||||||||    
T  25187974 ttaatccttaagtcactccgattttgttaagaactctcactataaaaggagagctcgcttcgcttattctttacaccgaaaaatacagttgatgttt 25188070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 39747005 - 39747059
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacact 178  Q
    ||||||| ||||||| | ||||||||||||||||||| | |||||||||||||||    
T  39747005 tttgttacgaactcttcctataaaaggagagctcgcccccctcattcttcacact 39747059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 39543305 - 39543197
Alignment:
Q  62 gattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctcgcct 161  Q
    |||| |||||| | ||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| || |||| | ||||||||||||| ||||||    
T  39543305 gattgcttaaagactaagttttcttaatccgtaagttagcttaatcgttaagtcgctccaaatttgttacgagctctgcatataaaaggagagttcgcct 39543206  T
Q  162 cactcattc 170  Q
    |||| ||||    
T  39543205 cacttattc 39543197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 39542194 - 39542286
Alignment:
Q  57 tcgcggattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgctccaaatttgttatgaactctccttataaaag 149  Q
    ||||||||| |||||| ||||| |||| |||||| |||| ||||||||||||||||||||||||| |||| | | ||||||||| ||||||||    
T  39542194 tcgcggattgcttaaagattaaatttgtttaatctgcaatttagcttaatccttaagtcgctccagatttataacgaactctccctataaaag 39542286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 160394 - 160348
Alignment:
Q  111 aagtcgctccaaatttgttatgaactctccttataaaaggagagctc 157  Q
    |||||| |||| |||||||||||||||| | ||||||||||||||||    
T  160394 aagtcgttccagatttgttatgaactctacctataaaaggagagctc 160348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 160469 - 160391
Alignment:
Q  19 ggaaagttctggatatatccactcacgagaaaacaaattcgcggattacttaaacattaagtttgcttaatccgcaagt 97  Q
    ||||| ||||||||| |||| ||| || ||||||| ||||||||||| |||||  || ||||||| |||||| ||||||    
T  160469 ggaaaattctggatacatccgctcgcgtgaaaacagattcgcggattgcttaataatgaagtttgtttaatctgcaagt 160391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 31327486 - 31327430
Alignment:
Q  101 cttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctc 157  Q
    |||||| |||||||  ||||||||| ||||  |||||||| ||||||||||||||||    
T  31327486 cttaattcttaagtttctccaaattagttacaaactctccctataaaaggagagctc 31327430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 31334207 - 31334151
Alignment:
Q  101 cttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctc 157  Q
    |||||| |||||||  ||||||||| ||||  |||||||| ||||||||||||||||    
T  31334207 cttaattcttaagtttctccaaattagttacaaactctccctataaaaggagagctc 31334151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 24169696 - 24169813
Alignment:
Q  48 aaaacaaattcgcggattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgctccaaatttgttatgaactctccttataaa 147  Q
    ||||||||| ||| |||| |||||  ||||||||| ||||||||||||||| ||||||||||||||| ||| |  |||||| | ||||||||| ||||||    
T  24169696 aaaacaaatccgcagattgcttaataattaagttttcttaatccgcaagtttgcttaatccttaagttgcttcggatttgtcacgaactctccctataaa 24169795  T
Q  148 aggagagctcgcctcact 165  Q
    ||||||||||||| ||||    
T  24169796 aggagagctcgccccact 24169813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 20932351 - 20932402
Alignment:
Q  75 ttaagtttgcttaatccgcaagttagcttaatccttaagtcgctccaaattt 126  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20932351 ttaagtttgcttaatccgcaagttagcttaatgcttaagtcgctccaaattt 20932402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 7874816 - 7874887
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattcttcaca-ctaaaaaacacagttgat 194  Q
    ||||||| ||||| ||| | |||||||||||||||||||||| |||||||||| | ||||||||||||||||    
T  7874816 tttgttacgaactttccctttaaaaggagagctcgcctcacttattcttcacaccgaaaaaacacagttgat 7874887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 47762000 - 47761922
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacactaaaaaacacagttgatgtttcatg 202  Q
    ||||||| ||||||| | ||||||| ||||||||||| ||||||||||| ||||  |||  |||| |||||| ||||||    
T  47762000 tttgttacgaactctgcctataaaatgagagctcgccccactcattctttacaccgaaattcacaattgatgattcatg 47761922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 20932414 - 20932491
Alignment:
Q  92 gcaagttagcttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctcgcctcactcatt 169  Q
    ||||||||| |||||||||||||| ||    ||||||||  |||||||| |||||||| || | ||||||||||||||    
T  20932414 gcaagttagtttaatccttaagtcactatggatttgttactaactctccctataaaagaagggttcgcctcactcatt 20932491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 26286506 - 26286562
Alignment:
Q  101 cttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctc 157  Q
    |||||| |||||||  ||||||||| ||||  |||||||||| ||||||||||||||    
T  26286506 cttaattcttaagtttctccaaattagttacaaactctccttgtaaaaggagagctc 26286562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 26707252 - 26707072
Alignment:
Q  18 tggaaagttctggatatatccactcacgagaaaacaaattcgcggattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgc 117  Q
    |||||||||| ||||||||||||||||  || ||   || |||  ||| |||||| |||||||||| ||| || |||||||| ||||||||||||||| |    
T  26707252 tggaaagttccggatatatccactcacatgagaagcgatccgcaaattgcttaaagattaagtttgttta-tctgcaagttaacttaatccttaagtcac 26707154  T
Q  118 tccaaatttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacactaaaaaacacagttgatgtttc 199  Q
    | || |||||||| ||| ||| | ||||||| ||||| | |||||||| |||||| ||||  ||||| || |||||||||||    
T  26707153 ttcagatttgttacgaagtctacctataaaaagagaggttgcctcacttattctttacaccgaaaaataccgttgatgtttc 26707072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 1640282 - 1640372
Alignment:
Q  78 agtttgcttaatccgcaagttagcttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctcgcctcactcatt 169  Q
    |||||||||||||||||||||||||||||| |||||||| |||  |||||||| ||| ||  | ||||||| |||||||||| | |||||||    
T  1640282 agtttgcttaatccgcaagttagcttaatcattaagtcggtccggatttgttacgaattcctcctataaaa-gagagctcgcataactcatt 1640372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 1640223 - 1640279
Alignment:
Q  74 attaagtttgcttaatccgcaagttagcttaatccttaagtcgctccaaatttgtta 130  Q
    ||||||||||||||||| |||||||||||||||| |||||||| |||  ||||||||    
T  1640223 attaagtttgcttaatctgcaagttagcttaatcattaagtcggtccggatttgtta 1640279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 25023642 - 25023688
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattc 170  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||    
T  25023642 tttgttatgagctctccctataaaaggagagctcgccccactcattc 25023688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 20810746 - 20810693
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacac 177  Q
    ||||||| ||||||| | ||||||||||||||||||| | ||||||||||||||    
T  20810746 tttgttacgaactcttcctataaaaggagagctcgcccccctcattcttcacac 20810693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 795124 - 795202
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacactaaaaaacacagttgatgtttcatg 202  Q
    ||||||| || |||||| |||||||||||| ||| ||||||  |||||| ||||| |||  ||||||||||| ||||||    
T  795124 tttgttacgatctctccctataaaaggagaactcccctcacctattctttacactgaaattcacagttgatgcttcatg 795202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 38436679 - 38436732
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacac 177  Q
    ||||||| ||||||  | ||||||||||||||||||| | ||||||||||||||    
T  38436679 tttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacac 38436732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 6025560 - 6025484
Alignment:
Q  101 cttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacac 177  Q
    ||||||||||||||| |||    |||||||  |||||||| ||||||||||| ||||| | ||||||||||| ||||    
T  6025560 cttaatccttaagtcactcgttttttgttacaaactctccctataaaaggagggctcgtcccactcattctttacac 6025484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 28221791 - 28221685
Alignment:
Q  89 tccgcaagttagcttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacactaaaaaacaca 188  Q
    ||||||||||| ||||||||||||||| |||   ||||||||  ||||| || |||||||||||||||||||||||| ||||||  |||  ||||| |||    
T  28221791 tccgcaagttaacttaatccttaagtcactctggatttgttactaactcgccctataaaaggagagctcgcctcacttattctttgcaccgaaaaataca 28221692  T
Q  189 gttgatg 195  Q
    |||||||    
T  28221691 gttgatg 28221685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 31987122 - 31987052
Alignment:
Q  102 ttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctcgcctcactcattctt 172  Q
    |||||||||||||| || |   ||||||| ||||||||  |||||||||||||||||||||||| ||||||    
T  31987122 ttaatccttaagtcacttcggttttgttacgaactctcactataaaaggagagctcgcctcacttattctt 31987052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 35679250 - 35679306
Alignment:
Q  101 cttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctc 157  Q
    |||||| |||||||| ||||||||| ||||  |||||||| ||||||||||||||||    
T  35679250 cttaattcttaagtctctccaaattagttacaaactctccctataaaaggagagctc 35679306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 33663 - 33764
Alignment:
Q  101 cttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacactaaaaaacacagttgatgtttca 200  Q
    ||||||||||||||| ||| |  ||||||| ||||| | | |||||||||||||||| || ||||||||||| ||||| |||  |||| |||||| ||||    
T  33663 cttaatccttaagtcactcgatttttgttacgaactatgcctataaaaggagagctcaccccactcattcttaacactgaaattcacatttgatgattca 33762  T
Q  201 tg 202  Q
    ||    
T  33763 tg 33764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 5600669 - 5600740
Alignment:
Q  101 cttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctcgcctcactcattctt 172  Q
    ||||||||||||||| ||||   |||||||  |||||||| ||||||||||||||| |||||||| ||||||    
T  5600669 cttaatccttaagtcactccgtttttgttacaaactctccctataaaaggagagcttgcctcacttattctt 5600740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 5740545 - 5740607
Alignment:
Q  109 ttaagtcgctccaaatttgttatgaa-ctctccttataaaaggagagctcgcctcactcattc 170  Q
    ||||||| ||||| |||||||||||  |||||| |||||||||||||||||||||||| ||||    
T  5740545 ttaagtcactccagatttgttatgattctctccctataaaaggagagctcgcctcacttattc 5740607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 11956401 - 11956495
Alignment:
Q  101 cttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacactaaaaaacacagttgatg 195  Q
    ||||||||||||||| |||    ||||||| ||||||| | |||||||||||||||| || ||||||||||| ||||  |||  |||||||||||    
T  11956401 cttaatccttaagtcactcgttttttgttacgaactctacctataaaaggagagctctccccactcattctttacaccgaaattcacagttgatg 11956495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 10485436 - 10485392
Alignment:
Q  133 aactctccttataaaaggagagctcgcctcactcattcttcacac 177  Q
    |||||||| | ||||||||||||||||| ||||||||||||||||    
T  10485436 aactctccctgtaaaaggagagctcgccccactcattcttcacac 10485392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 3902647 - 3902570
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacactaaaaaacacagttgatgtttcatg 202  Q
    ||||||| ||||||| | ||||||||||||| || || ||||||||||| ||||| |||  ||||||||||| ||||||    
T  3902647 tttgttacgaactctgcctataaaaggagagttc-ccgcactcattctttacactgaaattcacagttgatgattcatg 3902570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 17281286 - 17281339
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacac 177  Q
    |||||||  |||||||| |||||||||||||||| || ||||||||||| ||||    
T  17281286 tttgttacaaactctccctataaaaggagagctcaccccactcattcttaacac 17281339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 19478514 - 19478469
Alignment:
Q  132 gaactctccttataaaaggagagctcgcctcactcattcttcacac 177  Q
    ||||||| | ||||||||||||||||||| | ||||||||||||||    
T  19478514 gaactcttcctataaaaggagagctcgcccccctcattcttcacac 19478469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 12689719 - 12689663
Alignment:
Q  101 cttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctc 157  Q
    |||||| |||||||  ||||||||   |||| |||||||||||||||||||||||||    
T  12689719 cttaattcttaagtttctccaaatcaattataaactctccttataaaaggagagctc 12689663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 17290084 - 17290132
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattctt 172  Q
    ||||||| ||||||||| | |||||||||| |||||| |||||||||||    
T  17290084 tttgttacgaactctccctgtaaaaggagatctcgccccactcattctt 17290132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 43507 - 43406
Alignment:
Q  94 aagttagcttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacactaaaaaacacagttga 193  Q
    |||||| ||||||||||||||| ||     ||||||| ||||||||  |||||||||||| | |||| |||| |||||||||||| ||| ||||| ||||    
T  43507 aagttaacttaatccttaagtcactttggttttgttacgaactctcactataaaaggagatcccgccacacttattcttcacactgaaatacacaattga 43408  T
Q  194 tg 195  Q
    ||    
T  43407 tg 43406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 33848372 - 33848328
Alignment:
Q  133 aactctccttataaaaggagagctcgcctcactcattcttcacac 177  Q
    |||||||| |||||||||||||||||||||||| |||||| ||||    
T  33848372 aactctccctataaaaggagagctcgcctcacttattctttacac 33848328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 33616447 - 33616500
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattcttcacac 177  Q
    ||||||||||||||  | ||||||||||||||||||| | ||||||||| ||||    
T  33616447 tttgttatgaactcctcctataaaaggagagctcgcccccctcattctttacac 33616500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 19430386 - 19430338
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattctt 172  Q
    ||||||||||||||  | ||||||||||||||||||| | |||||||||    
T  19430386 tttgttatgaactcctcctataaaaggagagctcgcccccctcattctt 19430338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 19566535 - 19566487
Alignment:
Q  124 tttgttatgaactctccttataaaaggagagctcgcctcactcattctt 172  Q
    ||||||||||||||  | ||||||||||||||||||| | |||||||||    
T  19566535 tttgttatgaactcctcctataaaaggagagctcgcccccctcattctt 19566487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 42157593 - 42157641
Alignment:
Q  109 ttaagtcgctccaaatttgttatgaactctccttataaaaggagagctc 157  Q
    ||||||| ||||  ||||| |||||||||||| ||||||||||||||||    
T  42157593 ttaagtcactccggatttgctatgaactctccctataaaaggagagctc 42157641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 26196 - 26133
Alignment:
Q  94 aagttagcttaatccttaagtcgctccaaatttgttatgaactctccttataaaaggagagctc 157  Q
    |||||| |||||| |||||||  ||||||||| ||||  |||||||| ||||||||||||||||    
T  26196 aagttaacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagagctc 26133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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