View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4000_low_19 (Length: 216)
Name: NF4000_low_19
Description: NF4000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4000_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 41830025 - 41830211
Alignment:
| Q |
15 |
caaaggtattgtaatgaaaccaccaagtataccaatcaaggttcatatataaattctgaaggtttgactaaaaaatgggaccccaattaggagaaattga |
114 |
Q |
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| T |
41830025 |
caaaggtattgtaatgaaaccaccaagtctaccaatcaaggttcatatataaattctgaaggtttgactaaaaaatgggaccccaattaggagaaattga |
41830124 |
T |
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| Q |
115 |
ggg-aaaaaatgatatagccgtaggaacacaaatattattggatcagaatgaaaaatcaagaaaataaaaaggaggaaacatctttc |
200 |
Q |
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| T |
41830125 |
gggaaaaaaatgatatagccgtaggaacacaaatattattggatcagaatgaaaaatcaagaaaataaaaaggaggaaacatctttc |
41830211 |
T |
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