View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4000_low_2 (Length: 499)
Name: NF4000_low_2
Description: NF4000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4000_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 219 - 491
Target Start/End: Complemental strand, 35755210 - 35754924
Alignment:
| Q |
219 |
tggacaaggtaaatgtagatcaaatgctttgtgctgcaagcaagcaagcaaagactctataaagctgctgaaaggcctgttttgtgaaagtagttgagga |
318 |
Q |
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| T |
35755210 |
tggacaaggtaaatgtagatcaaatgctttgtgctgcaagcaagcaagcaaagactctataaagctgctgaaaggcctgttttgtgaaagtagttgagga |
35755111 |
T |
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| Q |
319 |
tataagttttgttaacttggttaga--------------attacatcatataagaagaattatgtatttttcatttttgttacagtcatcaagatgactt |
404 |
Q |
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| T |
35755110 |
tataagttttgttaacttggttggtgttatatatgtgatattacatcatataagaagaattatgtatttttcagttttgttacagtcatcaagatgactt |
35755011 |
T |
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| Q |
405 |
tatggttcatggtgtttgtaatttaagaattatacctacagtaatgaaatgagaggtataattcttgtaactttgatgtcctttgct |
491 |
Q |
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| T |
35755010 |
tatggttcatggtgtttgtaatttaagaattatacctacagtaatgaaatgagaggtataattcttgtaactttgatgacctttgct |
35754924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 35755408 - 35755259
Alignment:
| Q |
21 |
ggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcat |
120 |
Q |
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| T |
35755408 |
ggtgacttgcataacaagtaccaacaaggaagaaatggtgggagtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcat |
35755309 |
T |
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| Q |
121 |
ggtctaagagccctgaaaatcattatggcaataatgagtatcagatgaat |
170 |
Q |
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| T |
35755308 |
ggtctaagagccctgaaaatcattatggcaataatgagtatcagatgaat |
35755259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 35766030 - 35765891
Alignment:
| Q |
25 |
acttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtc |
124 |
Q |
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| T |
35766030 |
acttgcataacaagtatcaa---ggaagaaatggtgggagtgggaattggggaacatgggatggatataacagaaggagag---acaacatgtcatggtc |
35765937 |
T |
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| Q |
125 |
taagagccctgaaaatcattatggcaataatgagtatcagatgaat |
170 |
Q |
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| T |
35765936 |
taagaaccctggatatcatcatggcactagtgactatcagatgaat |
35765891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 35798954 - 35798847
Alignment:
| Q |
63 |
agtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtctaagagccctgaaaatcattatggcaataatgagtatc |
162 |
Q |
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| T |
35798954 |
agtggaaattggggaacatgggatggatataacagaaagaaagaaaacaacatgtcttggtctaagaaccctggatatcatcatggcactaatgagtatc |
35798855 |
T |
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| Q |
163 |
agatgaat |
170 |
Q |
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| T |
35798854 |
agatgaat |
35798847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 35789326 - 35789219
Alignment:
| Q |
63 |
agtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtctaagagccctgaaaatcattatggcaataatgagtatc |
162 |
Q |
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||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| || ||||| | || || |||| | ||||||||||| |
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| T |
35789326 |
agtggaaattgggggacatgggatggatataacagaaggagagaaaacaacatatcatggtctacgaaccctggatatgatcatggaactaatgagtatc |
35789227 |
T |
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| Q |
163 |
agatgaat |
170 |
Q |
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| T |
35789226 |
agatgaat |
35789219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 35760552 - 35760411
Alignment:
| Q |
23 |
tgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatgg |
122 |
Q |
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|||||||||||||||||| ||| ||||||| ||| ||| ||| ||||||||| ||||||||||||||| ||||| ||||||| |||||||| ||| |
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| T |
35760552 |
tgacttgcataacaagtatcaa---ggaagaaatggcgggcatggaaattggggagcatgggatggatataacagaaagagagaa---aacatgtcgtgg |
35760459 |
T |
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| Q |
123 |
tctaagagccctgaaaatcattatggcaataatgagtatcagatgaat |
170 |
Q |
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||||| | ||| | | || || |||| | |||||| |||||||||||| |
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| T |
35760458 |
tctaataaccccggacattatcatggtactaatgaatatcagatgaat |
35760411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 35785513 - 35785423
Alignment:
| Q |
45 |
caaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtctaagagccctg |
135 |
Q |
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|||||||||| |||| ||| | | ||||||| |||||||||||| |||| ||||| |||||||||||| ||||| |||||| || ||||| |
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| T |
35785513 |
caaggaagaaatggttggaatagtaattgggcaacatgggatgggtataacagaaagagagaaaacaagatgtctcggtctatgaaccctg |
35785423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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