View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4000_low_3 (Length: 467)
Name: NF4000_low_3
Description: NF4000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4000_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 30505182 - 30505629
Alignment:
| Q |
1 |
aaatgcaattaagccaaaataaaattcatgttaatccatgaactaaaatttatgattgaatcatgaatttagtccctcacgctttaatttaagagatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30505182 |
aaatgcaattaagccaaaataaaattcatgttaatccatgaactaaaatttatgattgaatcatgaatttagtccctcacgctttaatttaagagatggt |
30505281 |
T |
|
| Q |
101 |
tgaataatctcttaaatgagaaaaaacacactttagtcccttacaaatcacaaaaaacacgtctgttacaaatgaagaagctaactacacaagtctatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30505282 |
tgaataatctcttaaatgagaaaaaacacactttagtccctcacaaatcacaaaaaacacgtctgttacaaatgaagaagctaactacacaagtctatta |
30505381 |
T |
|
| Q |
201 |
catttacttctaaattcatattatgatacattacttcaaccatacaacaaaagccaaaatcacaacacaaacagcccatattatttccgatttgtttctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30505382 |
catttacttctaaattcatattatgatacattacttcaaccatacaacaaaagccaaaatcacaacacaaacagcccatattatttccgatttgtttctt |
30505481 |
T |
|
| Q |
301 |
ccaactacatttgcatttcattcaactgatatttcactatatccatctcacatttactaattttagcttccacatctctcttcatttgagtctccatcac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30505482 |
ccaactacatttgcatttcattcaactgatatttcactatatccatcttacatttactaattttagcttccacatcgctcttcatttgagtctccatcac |
30505581 |
T |
|
| Q |
401 |
gtctattccctctttaaccgaatctccgtcactttcatattcctcttc |
448 |
Q |
| |
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||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30505582 |
gtccattccctctttaaccgaatttccgtcactttcatattcctcttc |
30505629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 6538112 - 6538080
Alignment:
| Q |
344 |
catctcacatttactaattttagcttccacatc |
376 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
6538112 |
catctcacatttactaattttagcttccacatc |
6538080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 6538287 - 6538255
Alignment:
| Q |
344 |
catctcacatttactaattttagcttccacatc |
376 |
Q |
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||||||||||||||||||||||||||||||||| |
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|
| T |
6538287 |
catctcacatttactaattttagcttccacatc |
6538255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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