View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4000_low_4 (Length: 429)
Name: NF4000_low_4
Description: NF4000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4000_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 12631059 - 12631324
Alignment:
| Q |
11 |
cagagagcacaaacggagccttcattgttgacttaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttc |
110 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631059 |
cagagagcacaaacggagccttcattgttgaattaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttc |
12631158 |
T |
|
| Q |
111 |
gtaagctactttctagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatatttgtagttcatgaaattttctatttgcct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
12631159 |
gtaagctactttctagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatttttgtagttcatgaaagtttctatttgcct |
12631258 |
T |
|
| Q |
211 |
ttactcataagtgtctatccatgcatttcttgaacttttcatctttttcatagtaattgattattc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631259 |
ttactcataagtgtctatccatgcatttcttgaacttttcatctttttcatagtaattgattattc |
12631324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 45288869 - 45289134
Alignment:
| Q |
11 |
cagagagcacaaacggagccttcattgttgacttaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttc |
110 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45288869 |
cagagagcacaaacggagccttcattgttgaattaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttc |
45288968 |
T |
|
| Q |
111 |
gtaagctactttctagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatatttgtagttcatgaaattttctatttgcct |
210 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |
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| T |
45288969 |
gtaagctactttctagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctaatatttttgtagttcatgaaagtttctatttgcct |
45289068 |
T |
|
| Q |
211 |
ttactcataagtgtctatccatgcatttcttgaacttttcatctttttcatagtaattgattattc |
276 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45289069 |
ttactcataagtgtctatcgatgcatttcttgaacttttcatctttttcatagtaattgattattc |
45289134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 45289203 - 45289304
Alignment:
| Q |
312 |
gaaaaggtaaaatatggattaaaagacactaagcacaattagtgtaacgatgtgcnnnnnnnctacataatctttgtaagtaatcctcaataaggaatag |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
45289203 |
gaaaaggtaaaatatggattaaaagacactaagcacaattagtgcaacgatgtgcaaaaaaactacataatctttgtaagtaagcctcaataaggaatag |
45289302 |
T |
|
| Q |
412 |
aa |
413 |
Q |
| |
|
|| |
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|
| T |
45289303 |
aa |
45289304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 31607917 - 31607683
Alignment:
| Q |
11 |
cagagagcacaaacggagccttcattgttgacttaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31607917 |
cagagagcacaaacggagccttcattgttgaattaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttc |
31607818 |
T |
|
| Q |
111 |
gtaagctactttctagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatatttgtagttcatgaaattttctatttgcct |
210 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| | |
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| T |
31607817 |
gtaagctactttctagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatttttgtagttcatgaaagtttctatttgcat |
31607718 |
T |
|
| Q |
211 |
ttactcataagtgtctatccatgcatttcttgaac |
245 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
31607717 |
ttactcataagtgtctatccatgcatttcttgaac |
31607683 |
T |
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