View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4000_low_6 (Length: 387)

Name: NF4000_low_6
Description: NF4000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4000_low_6
NF4000_low_6
[»] chr2 (13 HSPs)
chr2 (17-345)||(33386566-33386896)
chr2 (108-258)||(6858971-6859128)
chr2 (125-268)||(14657492-14657639)
chr2 (123-258)||(37069879-37070020)
chr2 (123-211)||(40095769-40095857)
chr2 (128-211)||(8322155-8322238)
chr2 (124-211)||(9104602-9104689)
chr2 (108-258)||(32914420-32914577)
chr2 (127-169)||(13250512-13250554)
chr2 (123-203)||(3384719-3384799)
chr2 (130-192)||(3739849-3739911)
chr2 (123-200)||(5147146-5147222)
chr2 (123-211)||(38609897-38609984)
[»] scaffold0015 (1 HSPs)
scaffold0015 (80-262)||(56522-56710)
[»] chr8 (11 HSPs)
chr8 (17-262)||(11425462-11425723)
chr8 (82-258)||(40278901-40279083)
chr8 (123-211)||(30234974-30235062)
chr8 (123-211)||(35158904-35158992)
chr8 (126-268)||(18226981-18227128)
chr8 (130-267)||(37479177-37479319)
chr8 (145-211)||(27594267-27594333)
chr8 (108-268)||(1156234-1156401)
chr8 (123-191)||(34954345-34954413)
chr8 (159-258)||(9682374-9682478)
chr8 (156-211)||(17312863-17312918)
[»] chr4 (17 HSPs)
chr4 (17-262)||(5415152-5415414)
chr4 (80-268)||(23559984-23560178)
chr4 (78-268)||(48262959-48263159)
chr4 (123-232)||(55875820-55875934)
chr4 (108-269)||(779863-780031)
chr4 (108-239)||(7907369-7907503)
chr4 (123-211)||(46381995-46382083)
chr4 (117-192)||(38567939-38568014)
chr4 (108-258)||(52326970-52327127)
chr4 (159-274)||(9268295-9268415)
chr4 (108-182)||(4974581-4974657)
chr4 (159-269)||(2681121-2681236)
chr4 (126-211)||(17476191-17476276)
chr4 (130-191)||(30052355-30052416)
chr4 (123-211)||(55876028-55876116)
chr4 (137-211)||(19485772-19485846)
chr4 (142-211)||(34388832-34388901)
[»] chr7 (12 HSPs)
chr7 (17-262)||(44396248-44396510)
chr7 (123-239)||(36725769-36725890)
chr7 (123-234)||(43692529-43692645)
chr7 (128-268)||(48252871-48253016)
chr7 (123-191)||(38346458-38346526)
chr7 (127-211)||(43598808-43598892)
chr7 (130-192)||(49081222-49081284)
chr7 (137-234)||(23869931-23870028)
chr7 (123-211)||(36118065-36118152)
chr7 (123-211)||(49080797-49080884)
chr7 (148-211)||(12879286-12879349)
chr7 (126-186)||(42691361-42691421)
[»] chr1 (18 HSPs)
chr1 (80-268)||(7900125-7900319)
chr1 (80-258)||(19993310-19993494)
chr1 (123-211)||(47394403-47394491)
chr1 (108-235)||(51613257-51613390)
chr1 (108-213)||(37457653-37457760)
chr1 (123-211)||(50428456-50428544)
chr1 (108-239)||(23570968-23571106)
chr1 (108-213)||(1035774-1035881)
chr1 (123-267)||(43496368-43496517)
chr1 (123-211)||(27641550-27641638)
chr1 (159-267)||(46823646-46823759)
chr1 (133-215)||(10574351-10574433)
chr1 (108-211)||(19322781-19322886)
chr1 (145-211)||(26707124-26707190)
chr1 (126-211)||(16679941-16680026)
chr1 (203-267)||(7386289-7386353)
chr1 (108-211)||(7167958-7168063)
chr1 (123-215)||(29058578-29058670)
[»] chr3 (20 HSPs)
chr3 (80-267)||(52313854-52314047)
chr3 (80-258)||(53464273-53464457)
chr3 (80-211)||(11467232-11467364)
chr3 (126-267)||(36177195-36177341)
chr3 (103-235)||(35424135-35424274)
chr3 (129-234)||(1995580-1995690)
chr3 (123-239)||(15877756-15877877)
chr3 (123-211)||(28939705-28939793)
chr3 (123-211)||(49644342-49644430)
chr3 (124-192)||(49786993-49787061)
chr3 (124-193)||(4489826-4489895)
chr3 (205-269)||(11466748-11466812)
chr3 (130-209)||(29096142-29096221)
chr3 (134-211)||(45266862-45266940)
chr3 (130-211)||(14898445-14898526)
chr3 (127-203)||(20207061-20207137)
chr3 (123-190)||(7352098-7352165)
chr3 (156-211)||(35846188-35846243)
chr3 (128-257)||(35496088-35496222)
chr3 (145-211)||(40793204-40793270)
[»] chr5 (20 HSPs)
chr5 (98-239)||(39060195-39060343)
chr5 (150-262)||(34383704-34383823)
chr5 (123-258)||(34769547-34769687)
chr5 (17-80)||(34383630-34383693)
chr5 (108-211)||(4925098-4925203)
chr5 (80-169)||(35205251-35205341)
chr5 (80-169)||(35211810-35211900)
chr5 (175-258)||(35211941-35212029)
chr5 (202-268)||(4924776-4924842)
chr5 (127-211)||(23089307-23089391)
chr5 (202-250)||(35205068-35205116)
chr5 (175-254)||(35205134-35205218)
chr5 (202-250)||(35212043-35212091)
chr5 (205-262)||(37902450-37902507)
chr5 (124-168)||(38744674-38744718)
chr5 (156-211)||(9959328-9959383)
chr5 (130-213)||(23090659-23090742)
chr5 (137-211)||(10523863-10523937)
chr5 (131-192)||(35470311-35470372)
chr5 (147-211)||(14913492-14913556)
[»] chr6 (3 HSPs)
chr6 (130-211)||(2844121-2844202)
chr6 (145-239)||(19763539-19763638)
chr6 (123-211)||(10682487-10682574)
[»] scaffold0110 (2 HSPs)
scaffold0110 (123-269)||(13769-13921)
scaffold0110 (123-269)||(21506-21658)
[»] scaffold0032 (1 HSPs)
scaffold0032 (123-213)||(37932-38022)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 33386896 - 33386566
Alignment:
Q  17 accacccacttttaactaccaaaatattacttttgattatttttatcaattgataggtgagattgtaaaatatacatttaaagtatattgttattgtaag 116  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33386896 accacccacttttaaccgacaaaatattacttttgattatttttatcaattgataggtgagattgtaaaatatacatttaaagtatattgttattgtaag 33386797  T
Q  117 ataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatatatta 214  Q
    |||||||  |||||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||    
T  33386796 ataagtgggacccattttagagttttagaggagtggtatgaatatttagaaaatgcaattgagtggtttaaataattgggaattgtaaagtaatatatta 33386697  T
Q  215 tgtgggtcccatttataccacccattttgatggcatggatgtggttgcactaaggtattagattattaaagagtaggagtatttatatattaagtatttg 314  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  33386696 tgtgggtcccatttataccactcatttgggtggcatggatgtggttgctctaaggtattaggttattaaagagtaggagtatttatatattaagtctttg 33386597  T
Q  315 gaaactctattcgagtatcctcaattaattt 345  Q
    |||||||||||||| ||||||||||||||||    
T  33386596 gaaactctattcgaatatcctcaattaattt 33386566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 258
Target Start/End: Complemental strand, 6859128 - 6858971
Alignment:
Q  108 tattgtaagataagtga--cccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagt 205  Q
    |||||||||||||||||  || |||||| |||||| ||  ||||| ||  |||||||||||||  |||  ||||||||||||||||||||||||| ||||    
T  6859128 tattgtaagataagtgagacctattttaaagtttttgaaaagtggcatggatatttagaaaatatagtttagtggtttaaataattgggaagtgtgaagt 6859029  T
Q  206 aatatattat-----gtgggtcccatttataccacccattttgatggcatggatgtgg 258  Q
    |||||||| |     ||||| |||||||||||||||||| | | ||| ||||||||||    
T  6859028 aatatattgtattacgtgggacccatttataccacccatatgggtggtatggatgtgg 6858971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 125 - 268
Target Start/End: Original strand, 14657492 - 14657639
Alignment:
Q  125 cccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaata-----tattatgtgg 219  Q
    |||||||||||||||| ||  |||| ||| ||||||||||||||| ||| ||||||||||||||||||| |||||| || |||||     |||||||||     
T  14657492 cccattttagagttttggagcagtgatatgaatatttagaaaatgtagttgagtggtttaaataattggaaagtgtgaaataatataatgtattatgtgt 14657591  T
Q  220 gtcccatttataccacccattttgatggcatggatgtggttgcactaag 268  Q
    |  ||||||||||||||||| | |||| ||| ||||||| ||| |||||    
T  14657592 g-accatttataccacccatatagatgccatagatgtggatgctctaag 14657639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 258
Target Start/End: Original strand, 37069879 - 37070020
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaa-tgcagtcgagtggtttaaataattgggaagtgtaaagtaa-----tatattatg 216  Q
    |||||| |||| | |||||||||||| ||||  ||||||| |||| || |   ||||||||||||||||||||||||||||| |||     |||||||||    
T  37069879 gacccactttaaaattttagatgagtagtatggatatttaaaaaaatgtaagagagtggtttaaataattgggaagtgtaaaataatatattatattatg 37069978  T
Q  217 tgggtcccatttataccacccattttgatggcatggatgtgg 258  Q
    |||| |||||||||||||||||  | | ||||||||||||||    
T  37069979 tgggacccatttataccacccaaatgggtggcatggatgtgg 37070020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 40095769 - 40095857
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||| ||| |||| |||| | |||||||||| |||||||| |||||| ||| |||| ||||||||||||| ||||||||||||||||||    
T  40095769 gaccaattctagaattttgggtgagtggtatgaatatttaaaaaatgtagttgagtagtttaaataattgagaagtgtaaagtaatata 40095857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 8322155 - 8322238
Alignment:
Q  128 attttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||||||||| |||||||||||| |||||||  |||||| | | ||||||||||||||||||  |||||| ||||||||||    
T  8322155 attttagagttttggatgagtggtatgaatatttgaaaaatgtaattgagtggtttaaataattgaaaagtgtgaagtaatata 8322238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 9104689 - 9104602
Alignment:
Q  124 acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||||||||| | ||||||| |||||||||| ||||||| |||||| ||| |||||||||||||||||| ||| ||| || |||||||    
T  9104689 acccattttaaaattttagaagagtggtatagatatttaaaaaatgtagttgagtggtttaaataattgagaattgtgaaataatata 9104602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 258
Target Start/End: Original strand, 32914420 - 32914577
Alignment:
Q  108 tattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaa-tgcagtcgagtggtttaaataattgggaagtgtaaag 204  Q
    ||||||||||| ||||  ||| ||||||||||||| || |||||||||  |||||||||||| || ||| ||||||||||||||||||  |||||| |||    
T  32914420 tattgtaagattagtgggacctattttagagtttttga-gagtggtatggatatttagaaaaatgtagttgagtggtttaaataattgaaaagtgtgaag 32914518  T
Q  205 taat-----atattatgtgggtcccatttataccacccattttgatggcatggatgtgg 258  Q
    ||||     ||||||| |||| ||||||||||| || ||| | |||| |||||||||||    
T  32914519 taatataaaatattatatgggacccatttatactactcatatggatgacatggatgtgg 32914577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 13250554 - 13250512
Alignment:
Q  127 cattttagagttttagatgagtggtataaatatttagaaaatg 169  Q
    ||||||||||||||||||||||||||| |||||||| ||||||    
T  13250554 cattttagagttttagatgagtggtatgaatatttataaaatg 13250512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 3384799 - 3384719
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaa 203  Q
    ||||||||||| | |||| |||||||| ||| |||||||| |||||| ||| || | |||||||||||| | |||||||||    
T  3384799 gacccattttaaattttttgatgagtgatatgaatatttataaaatgtagttgaattgtttaaataattagaaagtgtaaa 3384719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 3739849 - 3739911
Alignment:
Q  130 tttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattg 192  Q
    |||| |||||||||||| |||||||||||||||||| ||| ||  || || ||||||||||||    
T  3739849 tttaaagttttagatgaatggtataaatatttagaatatgtagatgaatgatttaaataattg 3739911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 5147222 - 5147146
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgt 200  Q
    ||||| ||||| |||||| || |||| |||| ||||||||||||||| ||| || || |||||||||| |||||||||    
T  5147222 gacccgttttaaagttttgga-gagtagtatgaatatttagaaaatgtagttgaatgatttaaataatagggaagtgt 5147146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 38609897 - 38609984
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||||||| |||||| || |||| ||||  |||||||||||||  | | ||||||||||||||||  | ||||||||| |||||||    
T  38609897 gacccattttaaagttttgga-gagtagtatggatatttagaaaatataattgagtggtttaaataataagaaagtgtaaaataatata 38609984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 80 - 262
Target Start/End: Original strand, 56522 - 56710
Alignment:
Q  80 tgtaaaatatacatttaaagtatattgttattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgag 177  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  |||||| ||||||||||||| |||||||||  |||||||||||||| ||| |||    
T  56522 tgtaaaatata-atttaaagtatattgttattgtaagataagtgggacccatattagagttttagaggagtggtatggatatttagaaaatgtagttgag 56620  T
Q  178 tggtttaaataattgggaagtgtaaag-----taatatattatgtgggtcccatttataccacccattttgatggcatggatgtggttgc 262  Q
    ||||||||||||||| |||||||||||     |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  56621 tggtttaaataattgagaagtgtaaagtaatataatatattatgtgggtcccatttataccatccatttggatggcatggatgtggttgc 56710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 11425723 - 11425462
Alignment:
Q  17 accacccacttttaactaccaaaatattacttttgattatttttatcaattgataggtgagattgtaaaatat----------acatttaaagtatattg 106  Q
    ||||||||||||||| |  ||||| ||||||||||||||||||||||||||||||||||||||| | || ||           | |||||||||||||||    
T  11425723 accacccacttttaagtgacaaaagattacttttgattatttttatcaattgataggtgagattattaattagtataacgttgatatttaaagtatattg 11425624  T
Q  107 ttattgtaagataagt--gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaag 204  Q
    |||||||||||||||   ||||||||||||||||||||| ||||| ||| ||||||||||||||| ||| |||| | |||||||||||||||||||||||    
T  11425623 ttattgtaagataagcaggacccattttagagttttagaggagtg-tatgaatatttagaaaatgtagttgagtcggttaaataattgggaagtgtaaag 11425525  T
Q  205 taatata-----ttatgtgggtcccatttataccacccattttgatggcatggatgtggttgc 262  Q
    |||||||     |||||||| |||||||||||||| |||||| | ||||||||||||||||||    
T  11425524 taatataatatattatgtggatcccatttataccatccatttgggtggcatggatgtggttgc 11425462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 82 - 258
Target Start/End: Original strand, 40278901 - 40279083
Alignment:
Q  82 taaaatatacatttaaagtatattgttattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtg 179  Q
    ||||||||| ||||||||||||||||  ||||||||||||||  |||||||||||||||||||  |||||||||  |||||||||||||| ||| |||||    
T  40278901 taaaatata-atttaaagtatattgtagttgtaagataagtgggacccattttagagttttagtggagtggtatggatatttagaaaatgtagttgagtg 40278999  T
Q  180 gtttaaataattgggaagtgtaaag-----taatatattatgtgggtcccatttataccacccattttgatggcatggatgtgg 258  Q
    |||||||||||||| |||| |||||     ||||||||||||||||||||||||||||||| ||||| | ||||||| ||||||    
T  40279000 gtttaaataattggaaagtataaagtaatataatatattatgtgggtcccatttataccactcatttgggtggcatgaatgtgg 40279083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 30235062 - 30234974
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||| ||||||||||||| |||| || ||||||||||||| ||||| |||| |||| ||||||||| ||||||| |||||| |||||||    
T  30235062 gacctattttagagtttttgatgggttgtataaatatttaaaaaatacagttgagttgtttaaatatttgggaaatgtaaaataatata 30234974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 35158992 - 35158904
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||| ||||||||||||  ||  | |||||| ||||||||||||||| ||| ||||||||||||||||||||||||||  |||||||||    
T  35158992 gacctattttagagtttacgaaaaatggtatgaatatttagaaaatgtagttgagtggtttaaataattgggaagtgtccagtaatata 35158904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 268
Target Start/End: Original strand, 18226981 - 18227128
Alignment:
Q  126 ccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaata-----tattatgtggg 220  Q
    ||||||||||||||   ||| |||||||  ||||||| |||||| ||| |  ||||||||||||||||||||||| | ||||||     |||||||||||    
T  18226981 ccattttagagtttataatgggtggtatggatatttaaaaaatgtagttggatggtttaaataattgggaagtgtgaggtaatataatgtattatgtggg 18227080  T
Q  221 tcccatttataccacccattttgatggcatggatgtggttgcactaag 268  Q
     ||| |||||||||||||  | | |||||||||||||| ||| |||||    
T  18227081 acccgtttataccacccaaatgggtggcatggatgtggatgctctaag 18227128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 267
Target Start/End: Original strand, 37479177 - 37479319
Alignment:
Q  130 tttagagttttagatgagtggtataaatatttagaaaa-tgcagtcgagtggtttaaataattgggaagtgtaaagtaatata-----ttatgtgggtcc 223  Q
    ||||||||||||||||||| ||||  ||||||| |||| || ||| ||||||||||||||||||  |||| ||||||||||||     |||||||| | |    
T  37479177 tttagagttttagatgagtagtatggatatttaaaaaaatgtagttgagtggtttaaataattgaaaagtttaaagtaatataatatattatgtggattc 37479276  T
Q  224 catttataccacccattttgatggcatggatgtggttgcactaa 267  Q
     |||||||||| |||| |   |||||||||||||||||| ||||    
T  37479277 -atttataccatccatataagtggcatggatgtggttgctctaa 37479319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 27594267 - 27594333
Alignment:
Q  145 gagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||||||| | |||| || |||||||    
T  27594267 gagtggtatgaatatttagaaaatgtagttgagtggtttaaataattggaaggtgtgaaataatata 27594333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 268
Target Start/End: Original strand, 1156234 - 1156401
Alignment:
Q  108 tattgtaagataagtga--cccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagt 205  Q
    ||||||||||| |||||  || |||||| | |||| || |||||||||  |||||||||| ||  |||  ||||||||||||||||||||||||| || |    
T  1156234 tattgtaagatgagtgagacctattttaaaattttggaagagtggtatggatatttagaagatatagtttagtggtttaaataattgggaagtgtgaaat 1156333  T
Q  206 aatatattat-----gtgggtcccatttataccacccattttgatggcatggatgtggttgcactaag 268  Q
    |||||||| |     ||| | |||||||||||||| ||| | | ||| |||||||||| ||| |||||    
T  1156334 aatatattgtattacgtgagacccatttataccactcatatgggtggtatggatgtggatgctctaag 1156401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 34954413 - 34954345
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataatt 191  Q
    |||||| |||| |||||||||| ||  ||||||||||||| |||||| ||| |||||||||||||||||    
T  34954413 gacccaatttaaagttttagataagcagtataaatatttaaaaaatgtagttgagtggtttaaataatt 34954345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 9682374 - 9682478
Alignment:
Q  159 tttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatat--attat--gtgggtcccatttataccacccattttga-tggcatgga 253  Q
    ||||||||||| ||| ||||||||||||||||||  |||||| |||||||||  | |||   |||| |||||||||||||||||| | || |||||||||    
T  9682374 tttagaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtattactgggacccatttataccacccatgtagagtggcatgga 9682473  T
Q  254 tgtgg 258  Q
    |||||    
T  9682474 tgtgg 9682478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 17312863 - 17312918
Alignment:
Q  156 atatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||||||||| ||| ||| ||||||||||||||||||  |||||| ||||||||||    
T  17312863 atatttagaagatgtagttgagtggtttaaataattgaaaagtgtgaagtaatata 17312918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 5415414 - 5415152
Alignment:
Q  17 accacccacttttaactaccaaaatattacttttgattatttttatcaattgataggtgagattgtaaaata---tac-------atttaaagtatattg 106  Q
    ||||||||||||||| |  ||||| ||||||||||||||||||||||||||||||||||||||| | || ||   ||        |||||| ||||| ||    
T  5415414 accacccacttttaagtgacaaaagattacttttgattatttttatcaattgataggtgagattattaattagtataatgttggtatttaaggtatactg 5415315  T
Q  107 ttattgtaagataagt--gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaag 204  Q
    |||||||||||||| |  ||||||||||||||||||||| ||||||||| ||||||||||||||| ||| |||||  |||||||||||||||||||||||    
T  5415314 ttattgtaagataaataagacccattttagagttttagaggagtggtatgaatatttagaaaatgtagttgagtgagttaaataattgggaagtgtaaag 5415215  T
Q  205 taa-----tatattatgtgggtcccatttataccacccattttgatggcatggatgtggttgc 262  Q
    |||     |||||||||||| |||||||||||||| |||||| | ||||||||||||||||||    
T  5415214 taatataatatattatgtggatcccatttataccatccatttgggtggcatggatgtggttgc 5415152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 80 - 268
Target Start/End: Complemental strand, 23560178 - 23559984
Alignment:
Q  80 tgtaaaatatacatttaaagtatattgttattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgag 177  Q
    ||||||||||| ||||||| ||||||||  ||||||||||||||  |||||||||||||||||||| |||||| ||  |||||||||||||| ||| |||    
T  23560178 tgtaaaatata-atttaaaatatattgtagttgtaagataagtgggacccattttagagttttagaggagtggcatggatatttagaaaatgtagttgag 23560080  T
Q  178 tggtttaaataattgggaagtgtaaag-----taatatattatgtgggtcccatttataccacccattttgatggcatggatgtggttgcactaag 268  Q
    |||||||||||||||| ||||||||||     ||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| |||||    
T  23560079 tggtttaaataattggaaagtgtaaagtaatgtaatatattatgtgggtcccatttataccacccatttgggtggcatggatgtgggtgctctaag 23559984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 78 - 268
Target Start/End: Complemental strand, 48263159 - 48262959
Alignment:
Q  78 attgtaaaatatacatttaaagtatattgttattgtaagataagtga--cccattttagagttttagatgagtggtataaatatttagaaaatgcag-tc 174  Q
    ||||||||||||| ||||||| ||||||||  |||||||||||||||  ||||||||||||||||||| ||||||||| ||||||||||||||| || |     
T  48263159 attgtaaaatata-atttaaaatatattgtagttgtaagataagtgagacccattttagagttttagaggagtggtatgaatatttagaaaatgtagtta 48263061  T
Q  175 gagtggtttaaataattgggaagtgtaaag--------taatatattatgtgggtcccatttataccacccattttgatggcatggatgtggttgcacta 266  Q
     | || ||||||||||||  ||||||||||        |||||||||||||| ||| ||||||||||| |||||| | |||||||||||||| ||| |||    
T  48263060 aaatgatttaaataattgaaaagtgtaaagtaatagtataatatattatgtgagtctcatttataccatccatttgggtggcatggatgtggatgctcta 48262961  T
Q  267 ag 268  Q
    ||    
T  48262960 ag 48262959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 55875820 - 55875934
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaata-----tattatgt 217  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||||| |||||| ||  ||| ||||||||     ||||||||    
T  55875820 gacccattttagagttttagatgagtggtatgaatatttaaaaaatgtagttgagtggtttaagtaattgagagatgtgaagtaatataatttattatgt 55875919  T
Q  218 gggtcccatttatac 232  Q
    ||| |||||||||||    
T  55875920 gggacccatttatac 55875934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 108 - 269
Target Start/End: Complemental strand, 780031 - 779863
Alignment:
Q  108 tattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagt 205  Q
    ||||||||||||||||  |||||||||||| |||| || |||||||||  |||||||||||||  ||| |||||||||||||||| |  || ||| ||||    
T  780031 tattgtaagataagtgggacccattttagaattttggaggagtggtatggatatttagaaaatatagttgagtggtttaaataatggaaaaatgtgaagt 779932  T
Q  206 aata-----tattatgtgggtcccatttataccacccattttgatggcatggatgtggttgcactaagg 269  Q
    ||||     ||||||||| | |||||||||||||||||| | | ||| |||||||||| ||| ||||||    
T  779931 aatataatgtattatgtgagacccatttataccacccatatgggtggtatggatgtgggtgctctaagg 779863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 239
Target Start/End: Original strand, 7907369 - 7907503
Alignment:
Q  108 tattgtaagataagtgac--ccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaag- 204  Q
    ||||||||||| |||||   |||||||| |||||| || ||||| |||  |||||||||||||| ||| ||||||||||||||||||| |||||| |||     
T  7907369 tattgtaagattagtgagatccatttta-agttttggaagagtgatatggatatttagaaaatgtagttgagtggtttaaataattggaaagtgtgaagt 7907467  T
Q  205 -taatatattatgtgggtcccatttataccacccat 239  Q
     |||  ||||||||||| ||||||||||||||||||    
T  7907468 ataaagtattatgtgggacccatttataccacccat 7907503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 46381995 - 46382083
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||||||| |||||||||| |||||||| |||||||  |||||  ||| |||||||||||||||||| ||||||| || |||||||    
T  46381995 gacccattttaaagttttagataagtggtatgaatatttgaaaaatatagtggagtggtttaaataattgagaagtgtgaactaatata 46382083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 38567939 - 38568014
Alignment:
Q  117 ataagtgacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattg 192  Q
    |||| |||||||||||| |||||||||  |||||||| |||||||| |||||| ||| ||||||||||||||||||    
T  38567939 ataaatgacccattttaaagttttagaatagtggtatgaatatttaaaaaatgtagttgagtggtttaaataattg 38568014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 258
Target Start/End: Original strand, 52326970 - 52327127
Alignment:
Q  108 tattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaa-tgcagtcgagtggtttaaataattgggaagtgtaaag 204  Q
    ||||||||||| ||||  ||| ||||||||||||| || |||||||||  |||||||||||| || ||| ||||| ||||||||||||  |||||| |||    
T  52326970 tattgtaagattagtgggacctattttagagttttgga-gagtggtatggatatttagaaaaatgtagttgagtgatttaaataattgaaaagtgtgaag 52327068  T
Q  205 taatata-----ttatgtgggtcccatttataccacccattttgatggcatggatgtgg 258  Q
    |||||||     ||||||||| ||||||||||| || ||| | | ||||||||||||||    
T  52327069 taatataaaatattatgtgggacccatttatactactcatatgggtggcatggatgtgg 52327127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 9268415 - 9268295
Alignment:
Q  159 tttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatat--attat--gtgggtcccatttataccacccattttga-tggcatgga 253  Q
    ||||||||||| ||| ||||||||||||||||||  |||||| |||||||||  | |||   |||| |||||||||||||||||| | || |||||||||    
T  9268415 tttagaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtattactgggacccatttataccacccatgtagagtggcatgga 9268316  T
Q  254 tgtggttgcactaaggtatta 274  Q
    ||||| ||| ||||| |||||    
T  9268315 tgtgggtgctctaagttatta 9268295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 4974581 - 4974657
Alignment:
Q  108 tattgtaagataagtga--cccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtt 182  Q
    |||||||||||||||||  || ||||||||||||| || ||||||||| ||||||||||||||  ||| ||||||||    
T  4974581 tattgtaagataagtgagacctattttagagtttttgaggagtggtatgaatatttagaaaatatagttgagtggtt 4974657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 2681121 - 2681236
Alignment:
Q  159 tttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatat--attat--gtgggtcccatttataccacccattttga-tggcatgga 253  Q
    ||||||| ||| ||| ||||||||||||||||||  |||||| |||||||||  | |||   |||| |||||||||||||||||| | || |||||||||    
T  2681121 tttagaagatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtattactgggacccatttataccacccatgtagagtggcatgga 2681220  T
Q  254 tgtggttgcactaagg 269  Q
    ||||| ||| ||||||    
T  2681221 tgtgggtgctctaagg 2681236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 17476191 - 17476276
Alignment:
Q  126 ccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||||||| | |||| ||||||||||||  |||||||||||||| ||| |||| || ||||||||||| || ||| ||| ||||||    
T  17476191 ccattttaaaattttggatgagtggtatggatatttagaaaatgtagttgagttgtctaaataattggaaaatgtgaagaaatata 17476276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 30052355 - 30052416
Alignment:
Q  130 tttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataatt 191  Q
    ||||||||||||||||||| ||||  ||||||| |||||| ||| || ||||||||||||||    
T  30052355 tttagagttttagatgagtagtatggatatttaaaaaatgtagttgattggtttaaataatt 30052416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 55876116 - 55876028
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||| ||| ||||||||| | |||| |||||  ||||||||||| || ||| || | ||||||||||||| ||||||| ||||||||||    
T  55876116 gaccaattgtagagttttgggtgaggggtatggatatttagaaagtgtagttgaatagtttaaataattgagaagtgtgaagtaatata 55876028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 19485772 - 19485846
Alignment:
Q  137 ttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||||||||||||  ||||||||||||||| |   || ||||||||||||||   ||||||||| |||||||    
T  19485772 ttttagatgagtggtacgaatatttagaaaatgtaagtgaatggtttaaataattaaaaagtgtaaaataatata 19485846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 34388901 - 34388832
Alignment:
Q  142 gatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||||||| ||| |||||||||||||||  ||  |||||||||||||||||  || |||||| |||||||    
T  34388901 gatgagtgatatgaatatttagaaaatgtggtttagtggtttaaataattgaaaaatgtaaaataatata 34388832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 9e-52; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 44396248 - 44396510
Alignment:
Q  17 accacccacttttaactaccaaaatattacttttgattatttttatcaattgataggtgagattgtaaaata---tac-------atttaaagtatattg 106  Q
    ||||||||||||||| |  ||||| ||||||||||||||||||||||||||||||||||||||| | || ||   ||        |||||| ||||| ||    
T  44396248 accacccacttttaagtgacaaaagattacttttgattatttttatcaattgataggtgagattattaattagtataatgttggtatttaaggtatactg 44396347  T
Q  107 ttattgtaagataagt--gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaag 204  Q
    ||||||||||||||    || |||||||||||||||||| ||||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  44396348 ttattgtaagataaaaaagaaccattttagagttttagaggagtggtatgaatatttagaaaatgtagttgagtgggttaaataattgggaagtgtaaag 44396447  T
Q  205 -----taatatattatgtgggtcccatttataccacccattttgatggcatggatgtggttgc 262  Q
         ||||||||||||||| |||||||||||||| |||||| | ||||||||||||||||||    
T  44396448 taatataatatattatgtggatcccatttataccatccatttgggtggcatggatgtggttgc 44396510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 123 - 239
Target Start/End: Original strand, 36725769 - 36725890
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata-----ttatgt 217  Q
    |||||||||||||||||| ||||| |||||| |||||||||||| || ||| |||||||||||||||||| |||||||||| |||||||     ||| ||    
T  36725769 gacccattttagagtttttgatgaatggtatgaatatttagaaattgtagttgagtggtttaaataattgagaagtgtaaaataatataaagaattaagt 36725868  T
Q  218 gggtcccatttataccacccat 239  Q
    |||  |||||||||||||||||    
T  36725869 gggatccatttataccacccat 36725890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 123 - 234
Target Start/End: Original strand, 43692529 - 43692645
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata-----ttatgt 217  Q
    ||||||||||| ||||||||| |||||||||||||||||| |||||  ||  |||||||||||||||||| ||||||| || |||||||     ||||||    
T  43692529 gacccattttaaagttttagaagagtggtataaatatttaaaaaatttagatgagtggtttaaataattgagaagtgtgaaataatataatgtattatgt 43692628  T
Q  218 gggtcccatttatacca 234  Q
    ||| || ||||||||||    
T  43692629 gggacctatttatacca 43692645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 128 - 268
Target Start/End: Original strand, 48252871 - 48253016
Alignment:
Q  128 attttagagttttagatgagtggtataaatatttagaaaa-tgcagtcgagtggtttaaataattgggaagtgtaaagtaat-----atattatgtgggt 221  Q
    ||||||||||||| || |||||||||  |||||||||||| || ||| ||||||||||||||||||| |||||| |||||||     ||||||| ||||     
T  48252871 attttagagttttgga-gagtggtatggatatttagaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataaaatattatatggga 48252969  T
Q  222 cccatttataccacccattttgatggcatggatgtggttgcactaag 268  Q
    ||||||||||| || ||| | | |||||||||||||| ||| |||||    
T  48252970 cccatttatactactcatatgggtggcatggatgtgggtgctctaag 48253016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 38346526 - 38346458
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataatt 191  Q
    |||||| |||| |||||||||||||| ||||||||||||| |||||| ||| |||||||||||||||||    
T  38346526 gacccaatttaaagttttagatgagttgtataaatatttaaaaaatgtagttgagtggtttaaataatt 38346458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 43598808 - 43598892
Alignment:
Q  127 cattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||| ||||||||||||||||||| |||||||  |||||  ||| |||||||||||||||||| ||||||| || |||||||    
T  43598808 cattttaaagttttagatgagtggtatgaatatttgaaaaatatagttgagtggtttaaataattgagaagtgtgaactaatata 43598892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 49081222 - 49081284
Alignment:
Q  130 tttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattg 192  Q
    |||| ||||||||||||||||||||||||||||||||||| ||  || || ||||||||||||    
T  49081222 tttaaagttttagatgagtggtataaatatttagaaaatgtagatgaatgatttaaataattg 49081284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 23869931 - 23870028
Alignment:
Q  137 ttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatatattatgtgggtcccatttatacca 234  Q
    |||| ||||||||||||  |||||||||||||  |||  ||| ||||||| |||||  |||||| ||||||||||||||||| |  ||||||||||||    
T  23869931 ttttggatgagtggtatggatatttagaaaatatagttaagtagtttaaaaaattgaaaagtgtgaagtaatatattatgtgaggtccatttatacca 23870028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 36118152 - 36118065
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||||||| |||||| || |||| |||| ||||||||||||||| | | |||||||||||||||| | ||||||| || |||||||    
T  36118152 gacccattttaaagtttt-gaagagtagtatgaatatttagaaaatgtaattgagtggtttaaataatagagaagtgttaaataatata 36118065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 49080884 - 49080797
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||||||||||| ||||| || | ||||  ||||||| |||||| |||  |||||||||||||||||  |||||| ||||||||||    
T  49080884 gacccattttagagtattagaagattagtattgatatttaaaaaatgtagta-agtggtttaaataattgaaaagtgtgaagtaatata 49080797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 12879349 - 12879286
Alignment:
Q  148 tggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||||| ||||||||||||||  ||| | || ||||||||||||| ||||||| ||||||||||    
T  12879349 tggtatgaatatttagaaaatatagttgtgttgtttaaataattgagaagtgtgaagtaatata 12879286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 42691361 - 42691421
Alignment:
Q  126 ccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaa 186  Q
    |||||||| | ||||| ||||||||||| |||||||| |||||| ||| |||| |||||||    
T  42691361 ccattttaaaattttaaatgagtggtatgaatatttaaaaaatgtagttgagtcgtttaaa 42691421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 80 - 268
Target Start/End: Complemental strand, 7900319 - 7900125
Alignment:
Q  80 tgtaaaatatacatttaaagtatattgttattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgag 177  Q
    ||||||||||| ||||||||||| ||||  ||||||||||||||  |||||||||||||||||||| |||||||||  |||||||||||||| ||| |||    
T  7900319 tgtaaaatata-atttaaagtatgttgtagttgtaagataagtgggacccattttagagttttagaggagtggtatggatatttagaaaatgtagttgag 7900221  T
Q  178 tggtttaaataattgggaagtgtaaagtaa-----tatattatgtgggtcccatttataccacccattttgatggcatggatgtggttgcactaag 268  Q
    ||||||||||||||||||||| ||||||||     ||||||||||||||||||||||||| | |||||| | |||||||||||||| ||| |||||    
T  7900220 tggtttaaataattgggaagtataaagtaatataatatattatgtgggtcccatttatacgatccatttaggtggcatggatgtgggtgctctaag 7900125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 80 - 258
Target Start/End: Original strand, 19993310 - 19993494
Alignment:
Q  80 tgtaaaatatacatttaaagtatattgttattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgag 177  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||  ||| |||||||||||||||| |||||||||  |||||||||||||  ||| |||    
T  19993310 tgtaaaatata-atttaaagtatattgtagttgtaagataagtgtgacctattttagagttttagaggagtggtatggatatttagaaaatatagttgag 19993408  T
Q  178 tggtttaaataattgggaagtgtaaag-----taatatattatgtgggtcccatttataccacccattttgatggcatggatgtgg 258  Q
    ||||||||||||||   ||||||||||     ||||||||||||||| |||||| ||||||||||||||   | ||||||||||||    
T  19993409 tggtttaaataattaaaaagtgtaaagtaatataatatattatgtggatcccatctataccacccatttgagttgcatggatgtgg 19993494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 47394491 - 47394403
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||||||||| ||||||| ||||||||| |||||||| |||||| || ||||| ||||||||||||||||||||| ||||||||||    
T  47394491 gacccattttagacttttagaagagtggtatgaatatttaaaaaatgtagacgagtagtttaaataattgggaagtgtgaagtaatata 47394403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 108 - 235
Target Start/End: Complemental strand, 51613390 - 51613257
Alignment:
Q  108 tattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagt 205  Q
    ||||||||||| ||||  |||||||||| |||||| || ||||||||| | ||||||||||||| ||| ||||||||||||||||||| |||||| ||||    
T  51613390 tattgtaagattagtgggacccatttta-agttttggaagagtggtatgagtatttagaaaatgtagttgagtggtttaaataattggaaagtgtgaagt 51613292  T
Q  206 aata-----tattatgtgggtcccatttataccac 235  Q
    ||||     |||||||||||  |||||||||||||    
T  51613291 aatataaattattatgtgggatccatttataccac 51613257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 37457760 - 37457653
Alignment:
Q  108 tattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagt 205  Q
    ||||||||||||||||  ||| |||||| |||||| || |||||||||  |||||||||||||  ||| ||||||||| |||||||| ||||||| || |    
T  37457760 tattgtaagataagtgggacctattttaaagttttggaagagtggtatgtatatttagaaaatatagttgagtggttttaataattgagaagtgtgaaat 37457661  T
Q  206 aatatatt 213  Q
    ||||||||    
T  37457660 aatatatt 37457653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 50428456 - 50428544
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||||| ||||||||||| || |||||||||  |||||||||||||  ||| ||||| |||||||||||| ||||||| ||||||||||    
T  50428456 gacccactttagagttttggaggagtggtatggatatttagaaaatatagttgagtgatttaaataattgagaagtgtgaagtaatata 50428544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 239
Target Start/End: Original strand, 23570968 - 23571106
Alignment:
Q  108 tattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagt 205  Q
    ||||||||||||||||  || |||||||||||||| || |||||||||  ||||||| |||||  ||| |||| ||||||||||| |  || ||| ||||    
T  23570968 tattgtaagataagtgggactcattttagagttttggaggagtggtatggatatttaaaaaatatagttgagttgtttaaataatggaaaaatgtgaagt 23571067  T
Q  206 aata-----tattatgtgggtcccatttataccacccat 239  Q
    ||||     ||||||||||| ||||||||||||||||||    
T  23571068 aatataatgtattatgtgggacccatttataccacccat 23571106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 1035881 - 1035774
Alignment:
Q  108 tattgtaagataagtgacccat--tttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagt 205  Q
    |||||||||||||||||  |||  |||| |||||| || |||||||||  |||||||||||||  |||  ||||||||||||||||| ||||||| || |    
T  1035881 tattgtaagataagtgagacatattttaaagttttggaagagtggtatgtatatttagaaaatatagtttagtggtttaaataattgagaagtgtgaaat 1035782  T
Q  206 aatatatt 213  Q
    ||||||||    
T  1035781 aatatatt 1035774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 267
Target Start/End: Complemental strand, 43496517 - 43496368
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaata-----tattatgt 217  Q
    |||||||||||||||||   ||| |||||||  ||||||| |||||| ||| || | ||||||||||||| ||||||| | ||||||     ||||||||    
T  43496517 gacccattttagagtttataatgggtggtatggatatttaaaaaatgtagttgaatagtttaaataattgagaagtgtgaggtaatataatgtattatgt 43496418  T
Q  218 gggtcccatttataccacccattttgatggcatggatgtggttgcactaa 267  Q
    ||| ||| ||||||||| |||  | | |||||||||||||| ||| ||||    
T  43496417 gggacccgtttataccatccaaatgggtggcatggatgtggatgctctaa 43496368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 27641638 - 27641550
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||||||| |||||||||||||||||||  |||||| ||||||  ||| | ||||||||||||| || ||||| | || |||||||    
T  27641638 gacccattttaaagttttagatgagtggtatggatatttggaaaatttagttgggtggtttaaataactgagaagtatgaactaatata 27641550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 267
Target Start/End: Original strand, 46823646 - 46823759
Alignment:
Q  159 tttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatat--attat--gtgggtcccatttataccacccattttga-tggcatgga 253  Q
    ||||||||||| ||| ||||||||||||||||||  |||||| |||||||||  | |||   |||| |||||||||||||||||| | || |||||||||    
T  46823646 tttagaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtattactgggacccatttataccacccatgtagagtggcatgga 46823745  T
Q  254 tgtggttgcactaa 267  Q
    ||||| ||| ||||    
T  46823746 tgtgggtgctctaa 46823759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 10574351 - 10574433
Alignment:
Q  133 agagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatatattat 215  Q
    ||||| |||||||||| |||| |||||||| |||||  | | ||||| |||||||||||| ||| ||| ||||||||||||||    
T  10574351 agagtattagatgagtagtatgaatatttaaaaaatataattgagtgatttaaataattgagaaatgtgaagtaatatattat 10574433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 19322781 - 19322886
Alignment:
Q  108 tattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagt 205  Q
    ||||||||||||||||  | | ||||||||||||| ||  ||||||||  ||||||| |||||| ||| || ||||||||||||||| ||||| |  |||    
T  19322781 tattgtaagataagtgggatctattttagagttttggagaagtggtatggatatttaaaaaatgtagttgaatggtttaaataattgagaagtatgtagt 19322880  T
Q  206 aatata 211  Q
    ||||||    
T  19322881 aatata 19322886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 26707124 - 26707190
Alignment:
Q  145 gagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||||| ||||||||||||||| ||| || |||||||||||||||  |||||| || |||||||    
T  26707124 gagtggtatgaatatttagaaaatgtagttgaatggtttaaataattgaaaagtgtgaactaatata 26707190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 16680026 - 16679941
Alignment:
Q  126 ccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||||||||||||||  |||||||||||  ||||||  |||||| | | || ||||| ||||||||| ||||||| ||||||||||    
T  16680026 ccattttagagttttgaatgagtggtatgtatatttgaaaaatgtaattgaatggttaaaataattgagaagtgtgaagtaatata 16679941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 7386353 - 7386289
Alignment:
Q  203 agtaatatattatgtgggtcccatttataccacccattttgatggcatggatgtggttgcactaa 267  Q
    ||||||||||||||||||  ||||||||||||||||| |  ||| |||| |||||||||| ||||    
T  7386353 agtaatatattatgtgggatccatttataccacccatataaatgacatgaatgtggttgctctaa 7386289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 7167958 - 7168063
Alignment:
Q  108 tattgtaagataagtga--cccattttagagttttagatgagtggtataaatatttagaaaa-tgcagtcgagtggtttaaataattgggaagtgtaaag 204  Q
    ||||||||||| |||||  || ||||||||||||| || |||| || |  |||||||||||| || ||| | ||||||||||||||||| || |||||||    
T  7167958 tattgtaagattagtgagacctattttagagttttgga-gagtcgtgtggatatttagaaaaatgtagttgggtggtttaaataattggaaaatgtaaag 7168056  T
Q  205 taatata 211  Q
    |||||||    
T  7168057 taatata 7168063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 29058578 - 29058670
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatatattat 215  Q
    ||||||||||| | ||||||| ||||||||| |||||||| | ||||   | ||||| ||||||||||||  ||   ||||||||||||||||    
T  29058578 gacccattttaaaattttagaagagtggtatgaatatttaaagaatgtgattgagtgatttaaataattgtaaaaaataaagtaatatattat 29058670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 80 - 267
Target Start/End: Complemental strand, 52314047 - 52313854
Alignment:
Q  80 tgtaaaatatacatttaaagtatattgttattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgag 177  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||  |||||||||||||||||||  |||||||||  |||||||||||||| ||| |||    
T  52314047 tgtaaaatata-atttaaagtatattgtagttgtaagataagtgggacccattttagagttttaggggagtggtatggatatttagaaaatgtagttgag 52313949  T
Q  178 tggtttaaataattgggaagtgtaaagtaatatatt-----atgtgggtcccatttataccacccattttgatggcatggatgtggttgcactaa 267  Q
    |||||||||||| | | ||||||||||||||||| |     |||||||||||||||||||||||||||| | |||||||||||||| ||| ||||    
T  52313948 tggtttaaataactagaaagtgtaaagtaatataatgtaatatgtgggtcccatttataccacccatttgggtggcatggatgtgggtgctctaa 52313854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 80 - 258
Target Start/End: Complemental strand, 53464457 - 53464273
Alignment:
Q  80 tgtaaaatatacatttaaagtatattgttattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgag 177  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||  |||||||||||||||||||  |||||||||  |||||||||||||| ||| |||    
T  53464457 tgtaaaatata-atttaaagtatattgtagttgtaagataagtgggacccattttagagttttaggggagtggtatggatatttagaaaatgtagttgag 53464359  T
Q  178 tggtttaaataattgggaagtgtaaagtaatatatt-----atgtgggtcccatttataccacccattttgatggcatggatgtgg 258  Q
    |||||||||||| | | ||||||||||||||||| |     |||||||||||||||||||||||||||| | ||||||||||||||    
T  53464358 tggtttaaataactagaaagtgtaaagtaatataatgtaatatgtgggtcccatttataccacccatttgggtggcatggatgtgg 53464273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 11467364 - 11467232
Alignment:
Q  80 tgtaaaatatacatttaaagtatattgttattgtaagataagtga--cccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgag 177  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||| ||||||| ||||| |||  |||||||||||||| ||| ||     
T  11467364 tgtaaaatata-atttaaagtatattgttattgtaagataagtgagacccattttagaattttagaggagtgatatggatatttagaaaatgtagttgat 11467266  T
Q  178 tggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||||||||||| ||||||| ||||||||||    
T  11467265 tggtttaaataattgagaagtgtgaagtaatata 11467232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 126 - 267
Target Start/End: Original strand, 36177195 - 36177341
Alignment:
Q  126 ccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaata-----tattatgtggg 220  Q
    |||||||||||||||| ||||||||||| |||||||| |||||| ||  |||||||| |||||||||| |||||| ||||||||     |||||||||||    
T  36177195 ccattttagagttttaaatgagtggtatgaatatttaaaaaatgtagatgagtggttcaaataattggaaagtgtgaagtaatataatctattatgtggg 36177294  T
Q  221 tcccatttataccacccattttgatggcatggatgtggttgcactaa 267  Q
     ||||||||||||| |||| | | ||||||| |||||| ||| ||||    
T  36177295 acccatttataccatccatataggtggcatgaatgtggatgccctaa 36177341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 103 - 235
Target Start/End: Complemental strand, 35424274 - 35424135
Alignment:
Q  103 attgttattgtaagataagtga--cccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgt 200  Q
    |||||| |||||||||||||||  ||||||||||||||||||| | |||||||  |||||||||||||| ||| ||||||||||||||||||  || |||    
T  35424274 attgttgttgtaagataagtgagacccattttagagttttagaagggtggtatggatatttagaaaatgtagttgagtggtttaaataattgaaaaatgt 35424175  T
Q  201 aaagtaata-----tattatgtgggtcccatttataccac 235  Q
     ||||||||     ||||||||| | ||||||||||||||    
T  35424174 gaagtaatataatgtattatgtgagacccatttataccac 35424135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 129 - 234
Target Start/End: Complemental strand, 1995690 - 1995580
Alignment:
Q  129 ttttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaata-----tattatgtgggtcc 223  Q
    ||||||||||||| | |||||||||  |||||||||||||| |||  ||||||||||||||||||||||||| ||||||||     ||||||||||| ||    
T  1995690 ttttagagttttaaaggagtggtatggatatttagaaaatgtagttaagtggtttaaataattgggaagtgtgaagtaatataatgtattatgtgggacc 1995591  T
Q  224 catttatacca 234  Q
    |||||||||||    
T  1995590 catttatacca 1995580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 239
Target Start/End: Complemental strand, 15877877 - 15877756
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaata-----tattatgt 217  Q
    |||||||||||||||||| || |||||||||  |||||||||||||  ||| |||||||||||||||| |  || ||| ||||||||     ||||||||    
T  15877877 gacccattttagagttttggaggagtggtatggatatttagaaaatatagttgagtggtttaaataatggaaaaatgtgaagtaatataatgtattatgt 15877778  T
Q  218 gggtcccatttataccacccat 239  Q
    ||| ||||||||||||||||||    
T  15877777 gggacccatttataccacccat 15877756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 28939793 - 28939705
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||| ||| ||||||||| |||||||| ||| ||||||||||||||| ||| |||| ||||||||||||| ||||||| ||||||||||    
T  28939793 gaccaattgtagagttttggatgagtgatatgaatatttagaaaatgtagttgagtagtttaaataattgagaagtgtgaagtaatata 28939705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 49644342 - 49644430
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||||||||||||||||| ||||||||| ||  ||||||  |||||| ||| |||||||||||||||||| ||||||| ||||||||||    
T  49644342 gacccattttagagttttggatgagtggcatggatatttgaaaaatgtagttgagtggtttaaataattgagaagtgtgaagtaatata 49644430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 49787061 - 49786993
Alignment:
Q  124 acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattg 192  Q
    |||||||||| ||||||||||||||||||| |||||||| |||||  ||| ||||||||||||||||||    
T  49787061 acccattttaaagttttagatgagtggtatgaatatttataaaatatagttgagtggtttaaataattg 49786993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 4489826 - 4489895
Alignment:
Q  124 acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgg 193  Q
    |||||||||||||||||| |||||||||||||||||||| |||||  | | ||||||| |||||||||||    
T  4489826 acccattttagagttttaaatgagtggtataaatatttataaaatataattgagtggtataaataattgg 4489895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 11466812 - 11466748
Alignment:
Q  205 taatatattatgtgggtcccatttataccacccattttgatggcatggatgtggttgcactaagg 269  Q
    ||||||||||||||||||  ||||||||||||||||| | |||||||||||| ||||| ||||||    
T  11466812 taatatattatgtgggtcatatttataccacccatttaggtggcatggatgtagttgctctaagg 11466748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 29096221 - 29096142
Alignment:
Q  130 tttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaata 209  Q
    |||||||||||| ||||||||||| |||||||| | |||| ||| ||||||||||||||||||  || ||| ||||||||    
T  29096221 tttagagttttaaatgagtggtatgaatatttaaataatgtagttgagtggtttaaataattgaaaaatgtgaagtaata 29096142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 45266862 - 45266940
Alignment:
Q  134 gagttttagatgagtggtataaatatttagaaaatgc-agtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||| |||| ||||||| |||||||||||||||| |||  |||||||||||| |||| ||||||| || |||||||    
T  45266862 gagttttggatgggtggtatgaatatttagaaaatgctagtttagtggtttaaatgattgagaagtgtgaaataatata 45266940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 14898445 - 14898526
Alignment:
Q  130 tttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||||||||||  || |||||||| ||||||||||||||| |||  ||||||||||| |||||  || |||||| |||||||    
T  14898445 tttagagttttgaataagtggtatgaatatttagaaaatgtagtttagtggtttaaacaattgaaaaatgtaaaataatata 14898526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 20207137 - 20207061
Alignment:
Q  127 cattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaa 203  Q
    ||||||||||||||  ||||||  ||| |||||||||||||||  || |||| |||||||||||| | |||||||||    
T  20207137 cattttagagttttgaatgagttttatgaatatttagaaaatgtggttgagttgtttaaataattagaaagtgtaaa 20207061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 7352098 - 7352165
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataat 190  Q
    |||||||||||||||||   ||| ||||||| |||||||| |||||| ||| || |||||||||||||    
T  7352098 gacccattttagagtttataatgggtggtatgaatatttaaaaaatgtagttgaatggtttaaataat 7352165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 35846243 - 35846188
Alignment:
Q  156 atatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||||||||||||| ||| || |||||||||||||||  ||||||||| |||||||    
T  35846243 atatttagaaaatgtagttgaatggtttaaataattgaaaagtgtaaaataatata 35846188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 35496222 - 35496088
Alignment:
Q  128 attttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaag-----taatatattatgtgggtc 222  Q
    |||||||||| ||||| |||| ||||  | ||| | |||||| ||| || || |||||||||||| ||||||| |||     ||||||||||||| || |    
T  35496222 attttagagtattagaagagtagtatggaaattaaaaaaatgtagttgaatgatttaaataattgagaagtgtgaagtaatataatatattatgtaggac 35496123  T
Q  223 ccatttataccacccattttgatggcatggatgtg 257  Q
    ||||||||||||| ||| | | ||||| |||||||    
T  35496122 ccatttataccactcatataggtggcaaggatgtg 35496088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 40793270 - 40793204
Alignment:
Q  145 gagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||| ||| |||||||| |||||| ||| ||||||||||||||||||  |||||  ||||||||||    
T  40793270 gagtgatatgaatatttataaaatgtagttgagtggtttaaataattgaaaagtgagaagtaatata 40793204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 39060343 - 39060195
Alignment:
Q  98 agtatattgttattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattggga 195  Q
    ||||||||||||||||||||||||||  ||| |||||| ||||||||| ||||| |||  |||||||||||||  ||| |||||||||||||||| |  |    
T  39060343 agtatattgttattgtaagataagtgggacctattttaaagttttagaggagtgatatggatatttagaaaatatagttgagtggtttaaataatcgaaa 39060244  T
Q  196 agtgtaaagtaata-----tattatgtgggtcccatttataccacccat 239  Q
    ||||| ||||||||     ||||||||||| ||||||||||||||||||    
T  39060243 agtgtgaagtaatataatgtattatgtgggacccatttataccacccat 39060195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 150 - 262
Target Start/End: Original strand, 34383704 - 34383823
Alignment:
Q  150 gtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatat-------attatgtgggtcccatttataccacccatttt 242  Q
    ||||| |||||||||||||| |||   |||||||||||||||| |||||||||||||||||       ||||||||| ||| |||||||||| ||||||     
T  34383704 gtatagatatttagaaaatgtagttttgtggtttaaataattgagaagtgtaaagtaatataatatatattatgtggatcctatttataccatccatttg 34383803  T
Q  243 gatggcatggatgtggttgc 262  Q
    ||||||||||||||||||||    
T  34383804 gatggcatggatgtggttgc 34383823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 258
Target Start/End: Original strand, 34769547 - 34769687
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaata-----tattatgt 217  Q
    |||||||||||||||||   ||| |||||||  ||||||| |||||| ||| || ||||||||||||||||||||||| | ||||||     ||||||||    
T  34769547 gacccattttagagtttataatgggtggtatggatatttaaaaaatgtagttgaatggtttaaataattgggaagtgtgaggtaatataatgtattatgt 34769646  T
Q  218 gggtcccatttataccacccattttgatggcatggatgtgg 258  Q
    ||| ||| |||||||||||||  | ||||||||||||||||    
T  34769647 gggacccgtttataccacccaaatggatggcatggatgtgg 34769687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 34383630 - 34383693
Alignment:
Q  17 accacccacttttaactaccaaaatattacttttgattatttttatcaattgataggtgagatt 80  Q
    |||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||||||||    
T  34383630 accacccatttttaactgacaaaagattacttttgattatttttatcaattgataggtgagatt 34383693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 4925203 - 4925098
Alignment:
Q  108 tattgtaagataagtga--cccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagt 205  Q
    |||||||||||||||||  || ||||||||||||| || ||||| |||  ||||||| |||||| ||| ||||||||||||||||||  |||||| ||||    
T  4925203 tattgtaagataagtgagacctattttagagttttggaagagtgatatggatatttaaaaaatgtagttgagtggtttaaataattgaaaagtgtgaagt 4925104  T
Q  206 aatata 211  Q
    ||||||    
T  4925103 aatata 4925098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 35205341 - 35205251
Alignment:
Q  80 tgtaaaatatacatttaaagtatattgttattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatg 169  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||  | |||||||||||||||||  |||||||||  ||||||||||||||    
T  35205341 tgtaaaatata-atttaaagtatattgtagttgtaagataagtgggagccattttagagttttaggggagtggtatggatatttagaaaatg 35205251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 35211810 - 35211900
Alignment:
Q  80 tgtaaaatatacatttaaagtatattgttattgtaagataagtg--acccattttagagttttagatgagtggtataaatatttagaaaatg 169  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||  | |||||||||||||||||  |||||||||  ||||||||||||||    
T  35211810 tgtaaaatata-atttaaagtatattgtagttgtaagataagtgggagccattttagagttttaggggagtggtatggatatttagaaaatg 35211900  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 35211941 - 35212029
Alignment:
Q  175 gagtggtttaaataattgggaagtgtaaag-----taatatattatgtgggtcccatttataccacccattttgatggcatggatgtgg 258  Q
    ||||||||||||||| ||||||||||||||     ||||||| |||||||| ||||||||||||||| |||| | ||||||| ||||||    
T  35211941 gagtggtttaaataactgggaagtgtaaagtaatataatataatatgtgggacccatttataccacctatttgggtggcatgaatgtgg 35212029  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 4924842 - 4924776
Alignment:
Q  202 aagtaatatattatgtgggtcccatttataccacccattttgatggcatggatgtggttgcactaag 268  Q
    ||||||| ||||||||||| | |||||||||||||||| | | |||||||||||||||||| |||||    
T  4924842 aagtaatgtattatgtgggactcatttataccacccatatgggtggcatggatgtggttgctctaag 4924776  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 23089307 - 23089391
Alignment:
Q  127 cattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||  |  ||||| ||||||||||||| || ||| || |||||||    
T  23089307 cattttaaagttttagatgagtggtatgaatatttaaaaaatgtggatgagtgatttaaataattggaaaatgtgaaataatata 23089391  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 35205068 - 35205116
Alignment:
Q  202 aagtaatatattatgtgggtcccatttataccacccattttgatggcat 250  Q
    ||||||||||||||||||||||||||||||||||| || | ||||||||    
T  35205068 aagtaatatattatgtgggtcccatttataccaccaatatggatggcat 35205116  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 35205218 - 35205134
Alignment:
Q  175 gagtggtttaaataattgggaagtgtaaagtaatatattat-----gtgggtcccatttataccacccattttgatggcatggat 254  Q
    |||| |||||||||| ||||||||||||||||||||| |||     ||||| ||||||||||||||| |||| | ||||||||||    
T  35205218 gagttgtttaaataactgggaagtgtaaagtaatataatataatatgtgggacccatttataccacctatttgggtggcatggat 35205134  T

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Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 35212091 - 35212043
Alignment:
Q  202 aagtaatatattatgtgggtcccatttataccacccattttgatggcat 250  Q
    ||||||||||||||||||||||||||||||||||| || | ||||||||    
T  35212091 aagtaatatattatgtgggtcccatttataccaccaatatggatggcat 35212043  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 37902450 - 37902507
Alignment:
Q  205 taatatattatgtgggtcccatttataccacccattttgatggcatggatgtggttgc 262  Q
    |||||||| ||||||||| ||||||||||||| || | | ||||||||||||||||||    
T  37902450 taatatataatgtgggtctcatttataccaccaatatgggtggcatggatgtggttgc 37902507  T

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Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 38744718 - 38744674
Alignment:
Q  124 acccattttagagttttagatgagtggtataaatatttagaaaat 168  Q
    |||||||||| ||||||||||||||||||| |||||||| |||||    
T  38744718 acccattttaaagttttagatgagtggtatgaatatttaaaaaat 38744674  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 9959328 - 9959383
Alignment:
Q  156 atatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    |||||||||||||| ||| |||| |||||||||||||| |||||| ||||| ||||    
T  9959328 atatttagaaaatgtagttgagtagtttaaataattggaaagtgtgaagtagtata 9959383  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 23090659 - 23090742
Alignment:
Q  130 tttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatatatt 213  Q
    |||| |||||||||||  | |||| |||||||| |||| | |   ||||||||||||||||||| ||||||||| |||||||||    
T  23090659 tttaaagttttagatggatagtatgaatatttaaaaaaggtaagagagtggtttaaataattggaaagtgtaaaataatatatt 23090742  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 10523937 - 10523863
Alignment:
Q  137 ttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||||  ||||||| ||||||||||||||| |   |||||||||||||||||   ||||||||| |||||||    
T  10523937 ttttagatcggtggtatgaatatttagaaaatgtaagtgagtggtttaaataattaaaaagtgtaaaataatata 10523863  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 35470311 - 35470372
Alignment:
Q  131 ttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattg 192  Q
    ||||| ||||||| |||| |||| ||||||||||||||  ||| |||| |||||||||||||    
T  35470311 ttagaattttagacgagtagtatgaatatttagaaaatatagttgagtagtttaaataattg 35470372  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 14913556 - 14913492
Alignment:
Q  147 gtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||| ||||||||||||||  |||  ||| |||||||||||||  ||||||||| |||||||    
T  14913556 gtggtatgaatatttagaaaatatagtttagtagtttaaataattgaaaagtgtaaaataatata 14913492  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 2844121 - 2844202
Alignment:
Q  130 tttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||||||||||||||| |||| |||||||| |||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  2844121 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattgggaagtgtgaagtaatata 2844202  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 239
Target Start/End: Complemental strand, 19763638 - 19763539
Alignment:
Q  145 gagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaat-----atattatgtgggtcccatttataccacccat 239  Q
    ||||||||| ||||||||||||||| | |  |||||||||||||||||| |||||| |||||||     |||||| ||||| |||| |||||||||||||    
T  19763638 gagtggtatgaatatttagaaaatgtaattaagtggtttaaataattggaaagtgtgaagtaatataaaatattacgtgggacccagttataccacccat 19763539  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 10682487 - 10682574
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatata 211  Q
    ||||||||||||||||||  |||||||  ||  ||||||  |||||| ||| |||||||||||||||||| ||||||| ||||||||||    
T  10682487 gacccattttagagttttt-atgagtgacatggatatttgaaaaatgtagttgagtggtttaaataattgagaagtgtgaagtaatata 10682574  T

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Target: scaffold0110 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 269
Target Start/End: Complemental strand, 13921 - 13769
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaa-tgcagtcgagtggtttaaataattgggaagtgtaaagtaatata-----ttatg 216  Q
    |||||| |||| |||||||||||||| ||||  ||||||| |||| || |   ||||||||||||||||||||||||||||| |||||||     |||||    
T  13921 gacccactttaaagttttagatgagtagtatggatatttaaaaaaatgtaagagagtggtttaaataattgggaagtgtaaaataatatattatattatg 13822  T
Q  217 tgggtcccatttataccacccattttgatggcatggatgtggttgcactaagg 269  Q
    |||| |||||||||||||||||  | | |||||||||||||| ||| ||||||    
T  13821 tgggacccatttataccacccaaatgggtggcatggatgtggatgctctaagg 13769  T

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Target: scaffold0110; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 269
Target Start/End: Complemental strand, 21658 - 21506
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaa-tgcagtcgagtggtttaaataattgggaagtgtaaagtaatata-----ttatg 216  Q
    |||||| |||| |||||||||||||| ||||  ||||||| |||| || |   ||||||||||||||||||||||||||||| |||||||     |||||    
T  21658 gacccactttaaagttttagatgagtagtatggatatttaaaaaaatgtaagagagtggtttaaataattgggaagtgtaaaataatatattatattatg 21559  T
Q  217 tgggtcccatttataccacccattttgatggcatggatgtggttgcactaagg 269  Q
    |||| |||||||||||||||||  | | |||||||||||||| ||| ||||||    
T  21558 tgggacccatttataccacccaaatgggtggcatggatgtggatgctctaagg 21506  T

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Target: scaffold0032 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 37932 - 38022
Alignment:
Q  123 gacccattttagagttttagatgagtggtataaatatttagaaaatgcagtcgagtggtttaaataattgggaagtgtaaagtaatatatt 213  Q
    |||||| |||| ||||||||| | || ||||||||||||| |||||| |   ||||||||||||||||||| ||||||||| |||||||||    
T  37932 gacccactttaaagttttagacgggtagtataaatatttaaaaaatgtaagagagtggtttaaataattggaaagtgtaaaataatatatt 38022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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