View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4000_low_7 (Length: 357)
Name: NF4000_low_7
Description: NF4000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4000_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 24 - 342
Target Start/End: Original strand, 9282105 - 9282423
Alignment:
| Q |
24 |
tttatgaattgtctaccatataaatatagtttgtgttaatacaaagtaaatcaataaatacacaaattagaacgaattgagaatatcaattttctcctta |
123 |
Q |
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| T |
9282105 |
tttatgaattgtctaccatgtaaatatagtttgtgttaatacaaagtaaatcaataaatacacaaattagaacgaattgagaatatcaattttctcctta |
9282204 |
T |
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| Q |
124 |
agaaaatgaataaatacgcaatgagaacaaattgagaaagtattcctcggcagaaaaggaatcaaataaaatccnnnnnnntttccaactacctcggcac |
223 |
Q |
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| T |
9282205 |
agaaaatgaataaatacgcaatgagaacaaattgagaaagtattcctcggcagaaaaggaatcaaataaaatccaaaaaaaattccaactacctcggcac |
9282304 |
T |
|
| Q |
224 |
aatccttaaggccttcaatgttggtcatcgggtcaaattgagaaagtcttcctcattccacaattgagagttgtatgggagatggtctgctagggttttg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9282305 |
aatccttaaggccttcaatgttggtcatcgggtcaaattgagaaagtcttcctcattccacaattgagagttgtatgggagatggtctgctagggttttg |
9282404 |
T |
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| Q |
324 |
cgcatgagcgcagccttct |
342 |
Q |
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| T |
9282405 |
cgcatgagcgtagccttct |
9282423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 49713523 - 49713589
Alignment:
| Q |
213 |
tacctcggcacaatccttaaggccttcaatgttggtcatc-gggtcaaattgagaaagtcttcctca |
278 |
Q |
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| T |
49713523 |
tacctcggcacaatccttaaggccttcaacggtggtcatcggggacaaattgagaaagtcctcctca |
49713589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 21414574 - 21414640
Alignment:
| Q |
213 |
tacctcggcacaatccttaaggccttcaatgttggtcatc-gggtcaaattgagaaagtcttcctca |
278 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||| |||||| |
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| T |
21414574 |
tacctcggcacaatccttaaggccttcaacagtggtcatcggggacaaattcagaaagtcctcctca |
21414640 |
T |
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