View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4000_low_8 (Length: 332)
Name: NF4000_low_8
Description: NF4000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4000_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 54040094 - 54040294
Alignment:
| Q |
13 |
cagatatccaatttaaaagtccacttttcagaaacaacgacaaaatcaaaagaaaaaagagttataaaattatcttttctattcaata---ctaaagcac |
109 |
Q |
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| T |
54040094 |
cagatatccaatttaaaagtccacttttcagaaacaacgacaaaatcagaagaaaaaaaagttataaaattatcttttctattcaatagtactaaagcac |
54040193 |
T |
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| Q |
110 |
aattttattattataccgtctgcaacataaattttcacattctttaaaacccaaaaagacataaataaatcaagatttctatttctaataaatcaggact |
209 |
Q |
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| T |
54040194 |
aattttattattataccgtctgcaacataaattttcacattctttaaaacccaaaaagacataaataaatcaagatttctatttctaataaatcaggact |
54040293 |
T |
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| Q |
210 |
a |
210 |
Q |
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| T |
54040294 |
a |
54040294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 223 - 316
Target Start/End: Original strand, 54040284 - 54040377
Alignment:
| Q |
223 |
aatcaggactggttaaattcaacttttttcaaccctaattttttatgatgaacacgatcaatcatacacaaaatttcaactcagaaaagcaatc |
316 |
Q |
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| T |
54040284 |
aatcaggactagttaaattcaacttttttcaaccctaattttttatgatgaacacgatcaatgatacacaaaatttcaactcagaaaagcaatc |
54040377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 54039952 - 54039982
Alignment:
| Q |
16 |
atatccaatttaaaagtccacttttcagaaa |
46 |
Q |
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| T |
54039952 |
atatccaatttaaaagtccacttttcagaaa |
54039982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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