View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_high_10 (Length: 354)
Name: NF4001_high_10
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_high_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 354
Target Start/End: Complemental strand, 6146795 - 6146449
Alignment:
| Q |
10 |
attattctcacatgtgttatgactttctctttgcttatttttgtgattggaagcaaattttatcgttataggataccaaatggaagccctttggctccaa |
109 |
Q |
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| T |
6146795 |
attattctcacatgtgttatgactttctctttgcttatttttgtgattggaagcaaattttatcgttataggataccaaatggaagccctttgactccaa |
6146696 |
T |
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| Q |
110 |
tgttgcaagttattgttgctgcaatttctaagagaaagcttccttatccttctaatccaactcaattgtatgaagtttctaaggctgaggggaataatgg |
209 |
Q |
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| T |
6146695 |
tgttgcaagttattgttgcagcaatttctaagagaaagcttccttatccttctaatccaactcaattgtatgaagtttctaaggctgaggggaataatgg |
6146596 |
T |
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| Q |
210 |
aagacttttggctcataccaagaaactcaagtaagtatttcattaatgattttaaattactattattcaaattg-aaaagnnnnnnnntatgtaggaaaa |
308 |
Q |
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| T |
6146595 |
aagacttttggctcataccaagaaactcaagtaagtatttcattaatgattttagattactattattcaaattgaaaaaaaaaatatatatgtaggaaaa |
6146496 |
T |
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| Q |
309 |
gacgagtc-ttacaatcaaagtttcaattacggacatgatcactggt |
354 |
Q |
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| T |
6146495 |
gacgagtctttacaatcaaagtttcaattacggacatgatcactggt |
6146449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 67 - 192
Target Start/End: Complemental strand, 23693855 - 23693730
Alignment:
| Q |
67 |
ttttatcgttataggataccaaatggaagccctttggctccaatgttgcaagttattgttgctgcaatttctaagagaaagcttccttatccttctaatc |
166 |
Q |
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| T |
23693855 |
ttttatcgttatagggtaccaagtgggagtcctttgactccaatgttgcaagttcttgttgctgccttttctaaaaggaagcttccttatccttctaatc |
23693756 |
T |
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| Q |
167 |
caactcaattgtatgaagtttctaag |
192 |
Q |
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| T |
23693755 |
ctgatcaattgtatgaggtttctaag |
23693730 |
T |
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