View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4001_high_15 (Length: 304)
Name: NF4001_high_15
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_high_15 |
 | |
|
| [»] scaffold0103 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 65 - 300
Target Start/End: Original strand, 16699906 - 16700141
Alignment:
| Q |
65 |
ggagtatttgttttacgttcttttaccttagtgttgatagcatcagcactacttaaaattaatgatgcaaaagagtgtgatgaattttacgttgttagag |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16699906 |
ggagtatttgttttacgttcttttaccttagtgttgatagcatcagcactactcaaaattaatgatgcaaaagagtgtgatgaattttacgttgttagag |
16700005 |
T |
|
| Q |
165 |
aaggtgataccttttatagcatagcagagaagtgcaatgatccatttatcttgttatcgaatccacatgtccgtgatcctcaagatatctaacataaata |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16700006 |
aaggtgataccttttatagcatagcagagaagtgcaatgatccatttatcttgttatcgaatccacatgtccgtgatcctcaagatatctaacataaata |
16700105 |
T |
|
| Q |
265 |
aagcttgctttgcttgtgttgttgttttgatgatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
16700106 |
aagcttgctttgcttgtgttgttgttttgatgatgt |
16700141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 300
Target Start/End: Original strand, 22846323 - 22846358
Alignment:
| Q |
265 |
aagcttgctttgcttgtgttgttgttttgatgatgt |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22846323 |
aagcttgctttgcatgtgttgttgttttgatgatgt |
22846358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 241
Target Start/End: Original strand, 17322578 - 17322679
Alignment:
| Q |
140 |
tgtgatgaattttacgttgttagagaaggtgataccttttatagcatagcagagaagtgcaatgatccatttatcttgttatcgaatccacatgtccgtg |
239 |
Q |
| |
|
|||||||||||||| | |||| |||||| || |||| |||||| ||||| |||||||| |||||| || ||||||||| || |||||| |||||| || |
|
|
| T |
17322578 |
tgtgatgaattttagatggttaaagaaggggaaacctattatagtatagcggagaagtgtgatgatcaatctatcttgttctccaatccaaatgtccatg |
17322677 |
T |
|
| Q |
240 |
at |
241 |
Q |
| |
|
|| |
|
|
| T |
17322678 |
at |
17322679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 36005 - 35971
Alignment:
| Q |
266 |
agcttgctttgcttgtgttgttgttttgatgatgt |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
36005 |
agcttgctttgcctgtgttgttgttttgatgatgt |
35971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University