View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_high_19 (Length: 262)
Name: NF4001_high_19
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 29597883 - 29597649
Alignment:
| Q |
18 |
cttataaccttgttgacactcttggctatagttatgtgaaccaaggagtgcatttgagtggcactattagctggatttccttttatccaaaggatgttac |
117 |
Q |
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||||||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||| ||||||||||| |
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| T |
29597883 |
cttataaccttcttgatacccttggctgtagttatgtgaaccaaggagtgcatttgagtggcactgttaactggatatccatttatctgaaggatgttac |
29597784 |
T |
|
| Q |
118 |
tgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaagaaatcgctaccccctcctggagcagttaattcagtgtcaccatatatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||||| || ||||||| |||||||| ||||| | |
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| T |
29597783 |
tgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaggaaattgttgccccctcctggtgctgttaatttagtgtcacgatatact |
29597684 |
T |
|
| Q |
218 |
gaaccaattattgctgttttgatggtccgcctttg |
252 |
Q |
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||||||| ||||||||||||| ||| ||||||||| |
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| T |
29597683 |
gaaccaactattgctgttttgctggaccgcctttg |
29597649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 29647412 - 29647639
Alignment:
| Q |
18 |
cttataaccttgttgacactcttggctatagttatgtgaaccaa---ggagtgcatttgagtggcactattagctggatttccttttatccaaaggatgt |
114 |
Q |
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| T |
29647412 |
cttataaccttgttgatacccttggccatagtgttgtgaaccaacaaggagtgtatttgagtggcactgttaattggatttccatttatccggaggatgt |
29647511 |
T |
|
| Q |
115 |
tactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaagaaatcgctaccccctcctggagcagttaattcagtgtcaccatat |
214 |
Q |
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| T |
29647512 |
tactcttgataaatttgcgattatctcgcttgatattggtaccgagacatacaagaaactgctaccccctcctggagcagttaatttagtgccaccatat |
29647611 |
T |
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| Q |
215 |
attgaaccaattattgctgttttgatgg |
242 |
Q |
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|||||||||| ||||||| |||||||| |
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| T |
29647612 |
attgaaccaactattgctactttgatgg |
29647639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 29642095 - 29642312
Alignment:
| Q |
18 |
cttataaccttgttgacactcttggctatagttatgtgaac---caaggagtgcatttgagtggcactattagctggatttccttttatccaaaggatgt |
114 |
Q |
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|||||||||||||||| || |||||| || | ||||||| ||||||||| |||||||||||||| ||| ||||||||| ||||||| ||||||| |
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| T |
29642095 |
cttataaccttgttgatacccttggccatgatggtgtgaaccaacaaggagtgtatttgagtggcactgttaattggatttccatttatccggaggatgt |
29642194 |
T |
|
| Q |
115 |
tactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaagaaatcgctaccccctcctggagcagttaattcagtgtcaccatat |
214 |
Q |
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| T |
29642195 |
tactcttgataaatttgcgattatctcgcttgatcttggtaccgagacatacaagaaactgctaccccctcctggagcagttaatttagtgccaccatat |
29642294 |
T |
|
| Q |
215 |
attgaaccaattattgct |
232 |
Q |
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| |||||||| ||||||| |
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| T |
29642295 |
actgaaccaactattgct |
29642312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 19344811 - 19344749
Alignment:
| Q |
107 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
169 |
Q |
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|||||| ||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
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| T |
19344811 |
aaggatattactgttgggaaatttgtgattatctcccttgatcttggtaccgagacatacaag |
19344749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 19374608 - 19374663
Alignment:
| Q |
114 |
ttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
169 |
Q |
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||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
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| T |
19374608 |
ttactgttgggaaatttgtgattatctcccttgatcttggtaccgagacatacaag |
19374663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 19326221 - 19326159
Alignment:
| Q |
107 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
169 |
Q |
| |
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|||||| |||| || ||| ||||| |||||||||| |||||||||| |||||||||||||||| |
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| T |
19326221 |
aaggatattaccgtcgagcaatttatgattatctcccttgatcttggtactgagacatacaag |
19326159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 26256620 - 26256671
Alignment:
| Q |
118 |
tgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
169 |
Q |
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||||||| ||||||||||||| |||||||||||| | || |||||||||||| |
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| T |
26256620 |
tgttgagcaatttgtgattatttcgcttgatctttcaacggagacatacaag |
26256671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 24254662 - 24254600
Alignment:
| Q |
107 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
169 |
Q |
| |
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|||||| |||| |||||| |||| |||||||||| |||||||||| |||||||||||||||| |
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| T |
24254662 |
aaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacatacaag |
24254600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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