View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_high_25 (Length: 241)
Name: NF4001_high_25
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 17780533 - 17780370
Alignment:
| Q |
17 |
agatatcagctgactctactactgaaatcgtgaatgtgcataccaaaaaactgaagtaatgactcattaaagcattgtatgagccatttccttttattca |
116 |
Q |
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| T |
17780533 |
agatatcagctgtctctgctactgaaatcgtgaatgtgcataccaaaaaacagaagtaatgactcattaaagcattgtatgagccatttccttttattca |
17780434 |
T |
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| Q |
117 |
tgcagcaacgtaaatccacttaaatattgtcaaccccaaaggccaatagaaatcattcatccaa |
180 |
Q |
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| T |
17780433 |
tgcagcaacgtaaatccacttaaatattgtcaactccaaaggccaatagaaatcattcatccaa |
17780370 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 19315337 - 19315409
Alignment:
| Q |
17 |
agatatcagctgactctactactgaaatcgtgaat-gtgcataccaaaaaactgaagtaatgactcattaaag |
88 |
Q |
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||||||||||||||||||||||| |||| |||||| || |||| ||||| || |||||||||||||| |||| |
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| T |
19315337 |
agatatcagctgactctactactcaaattgtgaatcatgtatacaaaaaatctcaagtaatgactcatcaaag |
19315409 |
T |
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