View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4001_high_27 (Length: 238)

Name: NF4001_high_27
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4001_high_27
NF4001_high_27
[»] chr5 (40 HSPs)
chr5 (82-168)||(1396375-1396461)
chr5 (82-238)||(17965885-17966043)
chr5 (88-238)||(17966773-17966923)
chr5 (82-168)||(1397259-1397345)
chr5 (82-238)||(25983405-25983559)
chr5 (1-57)||(14628973-14629029)
chr5 (97-168)||(25984125-25984196)
chr5 (200-238)||(13837760-13837798)
chr5 (200-238)||(18307290-18307328)
chr5 (200-238)||(19037469-19037507)
chr5 (200-238)||(27659976-27660014)
chr5 (200-238)||(28238175-28238213)
chr5 (197-238)||(4204207-4204248)
chr5 (201-238)||(28388519-28388556)
chr5 (200-237)||(33995147-33995184)
chr5 (198-238)||(18538332-18538372)
chr5 (198-238)||(25497547-25497587)
chr5 (200-235)||(31787559-31787594)
chr5 (203-238)||(38855713-38855748)
chr5 (200-238)||(7757361-7757399)
chr5 (200-238)||(8577010-8577048)
chr5 (200-238)||(11029003-11029041)
chr5 (200-238)||(11346043-11346081)
chr5 (200-238)||(14280899-14280937)
chr5 (200-238)||(19035274-19035312)
chr5 (200-238)||(28876679-28876717)
chr5 (196-238)||(29430058-29430100)
chr5 (200-238)||(30708939-30708977)
chr5 (200-238)||(34122560-34122598)
chr5 (200-238)||(34123934-34123972)
chr5 (200-238)||(38968131-38968169)
chr5 (201-238)||(3603148-3603185)
chr5 (201-238)||(13838424-13838461)
chr5 (200-237)||(25877658-25877695)
chr5 (201-238)||(34682293-34682330)
chr5 (201-238)||(37814618-37814655)
chr5 (205-238)||(41201764-41201797)
chr5 (202-238)||(30705168-30705204)
chr5 (198-238)||(33993316-33993356)
chr5 (202-238)||(38408473-38408509)
[»] chr1 (57 HSPs)
chr1 (82-238)||(46217195-46217355)
chr1 (82-238)||(48751285-48751447)
chr1 (82-168)||(29424494-29424580)
chr1 (82-168)||(46043618-46043704)
chr1 (82-168)||(51288976-51289062)
chr1 (82-238)||(29425212-29425373)
chr1 (82-238)||(46216434-46216593)
chr1 (82-161)||(48749880-48749959)
chr1 (82-238)||(51289837-51289997)
chr1 (85-238)||(45943608-45943763)
chr1 (82-168)||(3940063-3940149)
chr1 (104-168)||(46044649-46044713)
chr1 (110-238)||(3941053-3941187)
chr1 (196-238)||(471091-471133)
chr1 (196-238)||(44336285-44336327)
chr1 (194-238)||(36072405-36072449)
chr1 (200-238)||(3728771-3728809)
chr1 (200-238)||(3944010-3944048)
chr1 (200-238)||(3993842-3993880)
chr1 (196-238)||(6557951-6557993)
chr1 (200-238)||(8548668-8548706)
chr1 (200-238)||(9711650-9711688)
chr1 (200-238)||(13636121-13636159)
chr1 (200-238)||(19161928-19161966)
chr1 (196-238)||(22524162-22524204)
chr1 (200-238)||(31783714-31783752)
chr1 (200-238)||(38771665-38771703)
chr1 (200-238)||(44470010-44470048)
chr1 (183-237)||(46043543-46043597)
chr1 (201-238)||(13633905-13633942)
chr1 (197-238)||(19054246-19054287)
chr1 (201-238)||(26633563-26633600)
chr1 (201-238)||(52802166-52802203)
chr1 (202-238)||(15051349-15051385)
chr1 (198-237)||(7981136-7981175)
chr1 (203-238)||(26879297-26879332)
chr1 (200-238)||(6562160-6562198)
chr1 (200-238)||(9710614-9710652)
chr1 (200-238)||(11183222-11183260)
chr1 (196-238)||(13178127-13178169)
chr1 (200-238)||(19159659-19159697)
chr1 (200-238)||(20353934-20353972)
chr1 (86-132)||(26445741-26445787)
chr1 (188-238)||(26606834-26606884)
chr1 (200-238)||(29622423-29622461)
chr1 (204-238)||(38119614-38119648)
chr1 (200-238)||(38689967-38690005)
chr1 (200-238)||(44598905-44598943)
chr1 (196-238)||(50113343-50113385)
chr1 (197-238)||(8460093-8460134)
chr1 (201-238)||(16270025-16270062)
chr1 (205-238)||(41804037-41804070)
chr1 (201-238)||(46141818-46141855)
chr1 (198-238)||(13173871-13173911)
chr1 (197-237)||(15695831-15695871)
chr1 (90-130)||(26454000-26454040)
chr1 (198-238)||(36076555-36076595)
[»] chr8 (50 HSPs)
chr8 (82-168)||(21406382-21406468)
chr8 (82-168)||(21800874-21800960)
chr8 (82-168)||(44726609-44726695)
chr8 (82-161)||(38135487-38135566)
chr8 (82-161)||(44727384-44727464)
chr8 (110-168)||(38134476-38134534)
chr8 (110-161)||(21835102-21835153)
chr8 (200-238)||(184551-184589)
chr8 (200-238)||(7344556-7344594)
chr8 (200-238)||(8419440-8419478)
chr8 (200-238)||(15030920-15030958)
chr8 (188-238)||(21406303-21406353)
chr8 (188-238)||(21800795-21800845)
chr8 (200-238)||(22550864-22550902)
chr8 (200-238)||(26451516-26451554)
chr8 (200-238)||(26663032-26663070)
chr8 (200-238)||(32375687-32375725)
chr8 (200-238)||(35962343-35962381)
chr8 (200-238)||(39601740-39601778)
chr8 (200-238)||(40077249-40077287)
chr8 (200-238)||(41016450-41016488)
chr8 (200-238)||(42602496-42602534)
chr8 (201-238)||(18438670-18438707)
chr8 (201-238)||(40039162-40039199)
chr8 (197-238)||(41855404-41855445)
chr8 (198-238)||(18205822-18205862)
chr8 (198-238)||(22577701-22577741)
chr8 (203-238)||(36677931-36677966)
chr8 (200-238)||(483852-483890)
chr8 (204-238)||(546424-546458)
chr8 (200-238)||(1114779-1114817)
chr8 (201-235)||(2146957-2146991)
chr8 (200-238)||(17924282-17924320)
chr8 (200-238)||(18441440-18441478)
chr8 (200-238)||(22014282-22014320)
chr8 (200-238)||(22519561-22519599)
chr8 (200-238)||(34892808-34892846)
chr8 (200-238)||(40740942-40740980)
chr8 (200-238)||(43262457-43262495)
chr8 (200-238)||(45066360-45066398)
chr8 (197-238)||(7168124-7168165)
chr8 (200-237)||(13782272-13782309)
chr8 (200-237)||(15033146-15033183)
chr8 (201-238)||(32383205-32383242)
chr8 (201-238)||(32437160-32437197)
chr8 (201-238)||(34366947-34366984)
chr8 (205-238)||(39491141-39491174)
chr8 (197-238)||(42731861-42731902)
chr8 (198-238)||(41274628-41274668)
chr8 (132-168)||(43263181-43263217)
[»] chr6 (36 HSPs)
chr6 (82-168)||(32222641-32222727)
chr6 (82-168)||(9048199-9048285)
chr6 (82-238)||(9048965-9049121)
chr6 (82-230)||(32223394-32223542)
chr6 (82-160)||(35242029-35242107)
chr6 (183-238)||(9048111-9048166)
chr6 (192-238)||(26351086-26351133)
chr6 (200-238)||(6204863-6204901)
chr6 (200-238)||(11691830-11691868)
chr6 (200-238)||(13382665-13382703)
chr6 (200-238)||(22305144-22305182)
chr6 (196-238)||(23958926-23958968)
chr6 (200-238)||(26712084-26712122)
chr6 (200-238)||(28249921-28249959)
chr6 (201-238)||(18351643-18351680)
chr6 (197-238)||(18606080-18606121)
chr6 (196-235)||(26712179-26712218)
chr6 (188-238)||(3177589-3177639)
chr6 (200-238)||(6207059-6207097)
chr6 (200-238)||(11694026-11694064)
chr6 (200-238)||(11840249-11840287)
chr6 (200-238)||(13388707-13388745)
chr6 (200-238)||(15546388-15546426)
chr6 (200-238)||(17597523-17597561)
chr6 (200-238)||(27616751-27616789)
chr6 (200-238)||(29076322-29076360)
chr6 (200-238)||(29109855-29109893)
chr6 (200-238)||(29111295-29111333)
chr6 (200-238)||(31768789-31768827)
chr6 (200-237)||(14011754-14011791)
chr6 (197-238)||(17338760-17338801)
chr6 (205-238)||(24721962-24721995)
chr6 (201-238)||(26712223-26712260)
chr6 (201-238)||(35096674-35096711)
chr6 (202-238)||(26423011-26423047)
chr6 (127-159)||(35243083-35243115)
[»] chr3 (70 HSPs)
chr3 (82-168)||(54964797-54964883)
chr3 (82-168)||(33471575-33471661)
chr3 (192-238)||(4015119-4015166)
chr3 (196-238)||(48250864-48250906)
chr3 (200-238)||(1293413-1293451)
chr3 (200-238)||(2647698-2647736)
chr3 (200-238)||(2743434-2743472)
chr3 (200-238)||(3953214-3953252)
chr3 (200-238)||(4002504-4002542)
chr3 (200-238)||(8156544-8156582)
chr3 (200-238)||(20918010-20918048)
chr3 (200-238)||(20926972-20927010)
chr3 (200-238)||(30943225-30943263)
chr3 (200-238)||(34049116-34049154)
chr3 (200-238)||(35743581-35743619)
chr3 (200-238)||(36134359-36134397)
chr3 (200-238)||(41803034-41803072)
chr3 (200-238)||(41844363-41844401)
chr3 (200-238)||(43476228-43476266)
chr3 (200-238)||(44227148-44227186)
chr3 (200-238)||(46697747-46697785)
chr3 (200-238)||(50477216-50477254)
chr3 (200-238)||(54389831-54389869)
chr3 (188-237)||(10492860-10492909)
chr3 (197-238)||(14043894-14043935)
chr3 (201-238)||(19440292-19440329)
chr3 (197-238)||(29918337-29918378)
chr3 (197-238)||(29967490-29967531)
chr3 (196-237)||(36134270-36134311)
chr3 (201-238)||(41579724-41579761)
chr3 (191-238)||(8475862-8475910)
chr3 (197-237)||(29929463-29929503)
chr3 (197-237)||(29978617-29978657)
chr3 (202-238)||(42760210-42760246)
chr3 (200-235)||(2271395-2271430)
chr3 (203-238)||(3501897-3501932)
chr3 (188-235)||(40877760-40877807)
chr3 (199-238)||(42756195-42756234)
chr3 (200-238)||(600543-600581)
chr3 (200-238)||(2950402-2950440)
chr3 (200-238)||(4004802-4004840)
chr3 (200-238)||(6143707-6143745)
chr3 (200-238)||(6489365-6489403)
chr3 (200-238)||(6745325-6745363)
chr3 (196-234)||(6928685-6928723)
chr3 (200-238)||(16484455-16484493)
chr3 (200-238)||(34691661-34691699)
chr3 (200-238)||(42165199-42165237)
chr3 (200-238)||(43478829-43478867)
chr3 (200-238)||(46406590-46406628)
chr3 (204-238)||(46989583-46989617)
chr3 (200-238)||(48246448-48246486)
chr3 (204-238)||(48566404-48566438)
chr3 (200-238)||(49138650-49138688)
chr3 (200-238)||(49140846-49140884)
chr3 (200-238)||(49144455-49144493)
chr3 (200-238)||(51402397-51402435)
chr3 (200-238)||(54392027-54392065)
chr3 (200-238)||(55385173-55385211)
chr3 (201-238)||(1294077-1294114)
chr3 (197-238)||(2062422-2062463)
chr3 (197-238)||(11270280-11270321)
chr3 (201-238)||(13896876-13896913)
chr3 (189-238)||(19341582-19341631)
chr3 (201-238)||(49268845-49268882)
chr3 (201-238)||(50604420-50604457)
chr3 (198-238)||(28611097-28611137)
chr3 (202-238)||(34712760-34712796)
chr3 (132-168)||(36719330-36719366)
chr3 (202-238)||(41612399-41612435)
[»] chr4 (61 HSPs)
chr4 (82-162)||(19994164-19994244)
chr4 (82-168)||(17343287-17343373)
chr4 (110-238)||(17342178-17342307)
chr4 (82-162)||(9472973-9473053)
chr4 (82-168)||(9473539-9473625)
chr4 (110-168)||(19993161-19993220)
chr4 (201-238)||(33383841-33383878)
chr4 (200-238)||(958593-958631)
chr4 (200-238)||(6178109-6178147)
chr4 (200-238)||(9890030-9890068)
chr4 (200-238)||(15995758-15995796)
chr4 (200-238)||(19069223-19069261)
chr4 (200-238)||(21022887-21022925)
chr4 (200-238)||(26932620-26932658)
chr4 (196-238)||(28234452-28234494)
chr4 (200-238)||(30726740-30726778)
chr4 (200-238)||(31425317-31425355)
chr4 (196-238)||(37022056-37022098)
chr4 (200-238)||(37563279-37563317)
chr4 (200-238)||(39773440-39773478)
chr4 (200-238)||(40358279-40358317)
chr4 (200-238)||(49094120-49094158)
chr4 (196-238)||(49563876-49563918)
chr4 (200-238)||(54634014-54634052)
chr4 (200-238)||(55793956-55793994)
chr4 (201-238)||(11494579-11494616)
chr4 (200-237)||(15999798-15999835)
chr4 (201-238)||(39590568-39590605)
chr4 (201-237)||(21018004-21018040)
chr4 (192-238)||(56565793-56565840)
chr4 (200-238)||(67628-67666)
chr4 (200-238)||(1089583-1089621)
chr4 (204-238)||(8109427-8109461)
chr4 (200-238)||(11084006-11084044)
chr4 (200-238)||(16984160-16984198)
chr4 (204-238)||(20208546-20208580)
chr4 (200-238)||(21018070-21018108)
chr4 (200-238)||(40354641-40354679)
chr4 (200-238)||(41793400-41793438)
chr4 (200-238)||(41795355-41795393)
chr4 (200-238)||(49169096-49169134)
chr4 (200-238)||(51492107-51492145)
chr4 (200-238)||(55407792-55407830)
chr4 (200-238)||(56138288-56138326)
chr4 (201-238)||(955828-955865)
chr4 (201-238)||(4783682-4783719)
chr4 (201-238)||(16983558-16983595)
chr4 (185-230)||(17343386-17343431)
chr4 (201-238)||(19073655-19073692)
chr4 (197-238)||(21470939-21470980)
chr4 (201-238)||(29700302-29700339)
chr4 (201-238)||(33409559-33409596)
chr4 (201-238)||(33410229-33410266)
chr4 (201-238)||(34151650-34151687)
chr4 (200-237)||(37563102-37563139)
chr4 (201-238)||(37959720-37959757)
chr4 (200-237)||(49096317-49096354)
chr4 (194-238)||(38368264-38368308)
chr4 (202-238)||(44680080-44680116)
chr4 (206-238)||(52529249-52529281)
chr4 (132-168)||(55704663-55704699)
[»] chr2 (49 HSPs)
chr2 (84-167)||(43258613-43258696)
chr2 (85-168)||(42176134-42176217)
chr2 (86-161)||(43257837-43257913)
chr2 (110-168)||(42177117-42177175)
chr2 (200-238)||(3795373-3795411)
chr2 (200-238)||(3937851-3937889)
chr2 (200-238)||(5351731-5351769)
chr2 (200-238)||(17424168-17424206)
chr2 (200-238)||(22003400-22003438)
chr2 (200-238)||(25184829-25184867)
chr2 (200-238)||(28468677-28468715)
chr2 (200-238)||(29397946-29397984)
chr2 (200-238)||(43536138-43536176)
chr2 (200-238)||(43982235-43982273)
chr2 (197-238)||(19187219-19187260)
chr2 (201-238)||(23409501-23409538)
chr2 (196-236)||(10825256-10825296)
chr2 (198-238)||(34921756-34921796)
chr2 (197-237)||(41008924-41008964)
chr2 (198-238)||(45475476-45475516)
chr2 (203-238)||(28477069-28477104)
chr2 (183-238)||(43258715-43258770)
chr2 (200-238)||(3935899-3935937)
chr2 (200-238)||(3943191-3943229)
chr2 (200-238)||(7189950-7189988)
chr2 (200-238)||(7263053-7263091)
chr2 (200-238)||(14456538-14456576)
chr2 (200-238)||(18000268-18000306)
chr2 (200-238)||(23346816-23346854)
chr2 (196-238)||(25964847-25964889)
chr2 (200-238)||(27276373-27276411)
chr2 (200-238)||(30273149-30273187)
chr2 (200-238)||(30493395-30493433)
chr2 (200-238)||(33222652-33222690)
chr2 (196-238)||(34639309-34639351)
chr2 (200-238)||(39798479-39798517)
chr2 (200-238)||(41183223-41183261)
chr2 (200-238)||(41500233-41500271)
chr2 (200-238)||(42499822-42499860)
chr2 (200-238)||(44100797-44100835)
chr2 (197-238)||(2271733-2271774)
chr2 (200-237)||(28138617-28138654)
chr2 (201-238)||(40221130-40221167)
chr2 (201-238)||(41565354-41565391)
chr2 (201-238)||(43984301-43984338)
chr2 (202-238)||(2983436-2983472)
chr2 (198-238)||(12908426-12908466)
chr2 (201-237)||(29407009-29407045)
chr2 (206-238)||(35490742-35490774)
[»] chr7 (37 HSPs)
chr7 (82-168)||(40142536-40142622)
chr7 (82-168)||(42024965-42025051)
chr7 (84-168)||(42024399-42024483)
chr7 (82-161)||(7611631-7611713)
chr7 (110-161)||(40141534-40141585)
chr7 (200-238)||(41884125-41884163)
chr7 (197-238)||(47060962-47061003)
chr7 (195-238)||(42795107-42795150)
chr7 (200-238)||(9367723-9367761)
chr7 (200-238)||(15070391-15070429)
chr7 (200-238)||(17840889-17840927)
chr7 (200-238)||(18105409-18105447)
chr7 (200-238)||(30355238-30355276)
chr7 (200-238)||(34742394-34742432)
chr7 (200-238)||(35606825-35606863)
chr7 (200-238)||(42499445-42499483)
chr7 (200-238)||(45767860-45767898)
chr7 (194-238)||(10705284-10705328)
chr7 (198-238)||(36781446-36781486)
chr7 (188-235)||(7953721-7953768)
chr7 (179-238)||(38555392-38555450)
chr7 (200-238)||(9365715-9365753)
chr7 (200-238)||(9494805-9494843)
chr7 (200-238)||(10098116-10098154)
chr7 (200-238)||(10098402-10098440)
chr7 (179-237)||(14412344-14412401)
chr7 (200-238)||(15074227-15074265)
chr7 (200-238)||(17834523-17834561)
chr7 (188-238)||(29112409-29112459)
chr7 (200-238)||(30791007-30791045)
chr7 (200-238)||(34738400-34738438)
chr7 (200-238)||(37340338-37340376)
chr7 (200-238)||(41047813-41047851)
chr7 (200-238)||(42682030-42682068)
chr7 (200-238)||(47776368-47776406)
chr7 (200-237)||(14102347-14102384)
chr7 (202-238)||(5541549-5541585)
[»] scaffold0012 (2 HSPs)
scaffold0012 (82-168)||(232636-232722)
scaffold0012 (114-237)||(232741-232868)
[»] scaffold1500 (1 HSPs)
scaffold1500 (110-168)||(662-720)
[»] scaffold0340 (1 HSPs)
scaffold0340 (200-237)||(1180-1217)
[»] scaffold0744 (1 HSPs)
scaffold0744 (200-238)||(422-460)
[»] scaffold0494 (3 HSPs)
scaffold0494 (200-238)||(867-905)
scaffold0494 (200-238)||(893-931)
scaffold0494 (200-238)||(5367-5405)
[»] scaffold0180 (1 HSPs)
scaffold0180 (196-238)||(15617-15659)
[»] scaffold0101 (2 HSPs)
scaffold0101 (200-238)||(41021-41059)
scaffold0101 (200-237)||(36533-36570)
[»] scaffold0038 (1 HSPs)
scaffold0038 (200-238)||(50083-50121)
[»] scaffold0794 (1 HSPs)
scaffold0794 (200-238)||(5307-5345)
[»] scaffold0504 (1 HSPs)
scaffold0504 (192-237)||(12419-12465)
[»] scaffold0341 (1 HSPs)
scaffold0341 (200-238)||(17350-17388)
[»] scaffold0293 (1 HSPs)
scaffold0293 (200-238)||(721-759)
[»] scaffold0199 (2 HSPs)
scaffold0199 (200-238)||(10688-10726)
scaffold0199 (200-238)||(12387-12425)
[»] scaffold0116 (1 HSPs)
scaffold0116 (200-238)||(15954-15992)
[»] scaffold0014 (1 HSPs)
scaffold0014 (200-238)||(84616-84654)
[»] scaffold0011 (1 HSPs)
scaffold0011 (204-238)||(235935-235969)
[»] scaffold0360 (1 HSPs)
scaffold0360 (198-235)||(7301-7338)


Alignment Details
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 1396461 - 1396375
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1396461 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 1396375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 238
Target Start/End: Complemental strand, 17966043 - 17965885
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagatttt--tatnnnnnnnnt 179  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||  ||              
T  17966043 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattaaaatcaataaatattaataatgataatataagatttttgtaaaaaaaaaaa 17965944  T
Q  180 aatttaaagtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    || |||| ||||||||||| ||||||| |||||| |||| |||||||||||||||||||    
T  17965943 aaattaaggtttgaagtttcctcggcaattaactaccgatgttttcctcggcagttaac 17965885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 17966773 - 17966923
Alignment:
Q  88 gattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagatttttatnnnnnnnntaatttaaa 187  Q
    |||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |          | ||||     
T  17966773 gattatgtttccttataaaatcacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagatttttgtaaaaaataataattaag 17966872  T
Q  188 gtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||| ||| |||||||||| ||||| |||||||||| |||||||    
T  17966873 gtttgaagtttcctcagcagttaactaccgagattttcctcggtagttaac 17966923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 1397259 - 1397345
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| |||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1397259 agtgttgattatgtttccttataaaatcacaatgaattaaatattattagaatcaataaatattaataatgacaatataagattttt 1397345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 238
Target Start/End: Complemental strand, 25983559 - 25983405
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagatttttatnnnnnnnntaa 181  Q
    |||||||||||| |||||||||| ||| ||||||||||||||||||||| ||||||||| |||||||||||||||| |||| ||||| |         ||    
T  25983559 agtgttgattatttttcctcatagaatcacaatgaattaaatagtattaaaatcaataattattaataatgacaatttaaggtttttgtaaaaaaa--aa 25983462  T
Q  182 tttaaagtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
     |||| ||||||||||| ||||| |||||||| |||| ||||||||||| |||||||    
T  25983461 attaaggtttgaagtttcctcggtagttaactaccgatgttttcctcggtagttaac 25983405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14629029 - 14628973
Alignment:
Q  1 cttaaaatctactgccgttgaatactgtcaaatttcataggcttcttcaatatttgt 57  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14629029 cttaaaatctactgccgttgaataccgtcaaatttcataggcttcttcaatatttgt 14628973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 25984125 - 25984196
Alignment:
Q  97 tcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||  ||| ||||||||||||||| ||||| ||||||||||||| |||||||| ||| |||| |||||    
T  25984125 tcctcatggaatcacaatgaattaaataatattaaaatcaataaatatcaataatgataatttaaggttttt 25984196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 13837798 - 13837760
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  13837798 ctcggcagttaactaccgaggttttcctcggcagttaac 13837760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 18307328 - 18307290
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  18307328 ctcggcagttaactaccgaggttttcctcggcagttaac 18307290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 19037469 - 19037507
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  19037469 ctcggcagttaactaccgaggttttcctcggcagttaac 19037507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 27660014 - 27659976
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  27660014 ctcggcagttaactaccgaggttttcctcggcagttaac 27659976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 28238213 - 28238175
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  28238213 ctcggcagttaactaccgaggttttcctcggcagttaac 28238175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 4204207 - 4204248
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  4204207 tttctcggcagttaactaccgaggttttcctcgacagttaac 4204248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 28388519 - 28388556
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  28388519 tcggcagttaactaccgaggttttcctcggcagttaac 28388556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 33995147 - 33995184
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||||||||||||| |||||||||||||||||||||||    
T  33995147 ctcggcagttaactcccgaggttttcctcggcagttaa 33995184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 18538332 - 18538372
Alignment:
Q  198 ttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  18538332 ttctcggcagttaactaccgaagttttcctcggcagttaac 18538372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 25497587 - 25497547
Alignment:
Q  198 ttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  25497587 ttctcggcagttaactaccgagattttcctcggcagttaac 25497547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 235
Target Start/End: Complemental strand, 31787594 - 31787559
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagtt 235  Q
    |||||||||||||| |||||||||||||||||||||    
T  31787594 ctcggcagttaactaccgaggttttcctcggcagtt 31787559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 38855713 - 38855748
Alignment:
Q  203 ggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||| ||||||||||||||||||||||||    
T  38855713 ggcagttaactaccgaggttttcctcggcagttaac 38855748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 7757399 - 7757361
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  7757399 ctcggcagttaactagcgaggttttcctcggcagttaac 7757361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 8577048 - 8577010
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  8577048 ctcggcagttaactaccgaggttttcttcggcagttaac 8577010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 11029003 - 11029041
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  11029003 ctcggcagttaactcccgaggatttcctcggcagttaac 11029041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 11346081 - 11346043
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  11346081 ctcgacagttaactaccgaggttttcctcggcagttaac 11346043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 14280899 - 14280937
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  14280899 ctcggccgttaactaccgaggttttcctcggcagttaac 14280937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 19035312 - 19035274
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  19035312 ctcggcagttaactaccgaggttttcctcggcacttaac 19035274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 28876717 - 28876679
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  28876717 ctcggcagttaactgccgaggttttcctcgggagttaac 28876679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 29430100 - 29430058
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||| |||||||| |||||||||||||||||| |||||    
T  29430100 ttttctcggtagttaactgccgaggttttcctcggcacttaac 29430058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 30708977 - 30708939
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  30708977 ctcggcagttaactcccgaggtttccctcggcagttaac 30708939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 34122598 - 34122560
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  34122598 ctcggcagttaactaccgagcttttcctcggcagttaac 34122560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 34123934 - 34123972
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  34123934 ctcggcagttaactaccgaggttttccttggcagttaac 34123972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 38968169 - 38968131
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  38968169 ctcggcagttaactatcgaggttttcctcggcagttaac 38968131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 3603148 - 3603185
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  3603148 tcggcagttaactaccgaggttttcctcggaagttaac 3603185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 13838424 - 13838461
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  13838424 tcggcagttaactgccgaggttttcctcggtagttaac 13838461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 25877695 - 25877658
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  25877695 ctcggcagttaactaccgaagttttcctcggcagttaa 25877658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 34682330 - 34682293
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  34682330 tcggtagttaactcccgaggttttcctcggcagttaac 34682293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 37814655 - 37814618
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| || |||||||||||||||||||||    
T  37814655 tcggcagttaactaccaaggttttcctcggcagttaac 37814618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 41201797 - 41201764
Alignment:
Q  205 cagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||| ||||||||||||||||||||||||    
T  41201797 cagttaactaccgaggttttcctcggcagttaac 41201764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 30705168 - 30705204
Alignment:
Q  202 cggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||| |||||| |||||||||||||||||    
T  30705168 cggcagttaactaccgaggatttcctcggcagttaac 30705204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 33993356 - 33993316
Alignment:
Q  198 ttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||| |||||||||| | |||||||||||    
T  33993356 ttctcggcagttaactaccgaggtttttcacggcagttaac 33993316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 38408509 - 38408473
Alignment:
Q  202 cggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||| |||||| |||||||||||||||||    
T  38408509 cggcagttaactcccgaggatttcctcggcagttaac 38408473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 57)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 238
Target Start/End: Original strand, 46217195 - 46217355
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt----atnnnnnnn 177  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    |            
T  46217195 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagttttttgtaaaaaaaaata 46217294  T
Q  178 ntaatttaaagtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
      || |||| ||||||||||| |||||||||||||| |||| ||||||||||| |||||||    
T  46217295 aaaaattaaggtttgaagtttcctcggcagttaactaccgaagttttcctcggtagttaac 46217355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 82 - 238
Target Start/End: Original strand, 48751285 - 48751447
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt------atnnnnn 175  Q
    |||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||      ||         
T  48751285 agtgttgattatgtttcctcttaaaatcacaatgaattaaatagtattagaatcaataaatattaataatgataatataaggtttttgtaaaaataaaat 48751384  T
Q  176 nnntaatttaaagtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
        || |||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||    
T  48751385 aaaaaaattaaggtttgaagtttcctcggcagttaactaccgaggttttcctcggcaattaac 48751447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 29424580 - 29424494
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  29424580 agtgttgattatgtttcctcataaaatcacaatgaattaaataatattagaatcaataaatattaataatgacaatataagtttttt 29424494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 46043704 - 46043618
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  46043704 agtgttgattatgtttcctcataaaatcacaatgaattaaataatattagaatcaataaatattaataatgacaatataaggttttt 46043618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 51289062 - 51288976
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  51289062 agtgttgattatgtttccttataaaatcacaatgaattaattagtattagaatcaataaatattaataatgacaatataagattttt 51288976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 82 - 238
Target Start/End: Original strand, 29425212 - 29425373
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatc-aataaatattaataatgacaatataagatttttatnnnnnnnnta 180  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||| |         |    
T  29425212 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattagaatcaaataaatattaataatgacaatataatttttttgtgaaaaataaa 29425311  T
Q  181 at----ttaaagtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||    |||| ||||||||||| |||||||||||||| |||| ||||||||||| |||||||    
T  29425312 ataaaattaaggtttgaagtttcctcggcagttaactaccgaagttttcctcggtagttaac 29425373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 82 - 238
Target Start/End: Complemental strand, 46216593 - 46216434
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatc-aataaatattaataatgacaatataagatttttatnnnnnnnnta 180  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||  ||||| |        ||    
T  46216593 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattagaatcaaataaacattaataatgacaatataatttttttgtgaaaaaaata 46216494  T
Q  181 at--ttaaagtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||  |||| ||||||||||| |||||||||||||| |||| ||||||||||  |||||||    
T  46216493 ataattaaggtttgaagtttcctcggcagttaactaccgaagttttcctcgatagttaac 46216434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 48749959 - 48749880
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataa 161  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  48749959 agtgttgattatgtttcctcataaaatcacaatgaattaaataatattagaatcaataaatattaataatgacaaaataa 48749880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 82 - 238
Target Start/End: Original strand, 51289837 - 51289997
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt----atnnnnnnn 177  Q
    |||||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||    |            
T  51289837 agtgttgattatgttttctcataaaatcacaataaattaaatagtattagaatcaataaatattaatagtgacaatataaggtttttgtaaaaaaaataa 51289936  T
Q  178 ntaatttaaagtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
     ||| |||| |||| ||||||  ||||||| ||||| ||||||||||||||||||||||||    
T  51289937 ataaattaaggtttaaagtttcatcggcagctaactaccgaggttttcctcggcagttaac 51289997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 238
Target Start/End: Original strand, 45943608 - 45943763
Alignment:
Q  85 gttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagatttt--tatnnnnnnnntaat 182  Q
    ||||||||| ||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||  ||          ||     
T  45943608 gttgattatgtttcctcgtagaatcacaatgaattaaatagtattaaaatcaataaatattaataatgacaatttaaggtttttgtaaaaaaataaaaaa 45943707  T
Q  183 ttaaagtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||| ||||||||||| |||||||||||||| |||| ||||||||||| |||||||    
T  45943708 ttaaggtttgaagtttcctcggcagttaactaccgaagttttcctcggtagttaac 45943763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 3940149 - 3940063
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaa-tgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  3940149 agtgttgattatgtttcctcataaaatcacaaatgaattaaatagtattaaaa-caataaatattaataatgacaatataagattttt 3940063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 46044649 - 46044713
Alignment:
Q  104 aaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    ||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||    
T  46044649 aaaatcacaatgaattaattagtattagaatcaataaatattagtaatgacaatataaggttttt 46044713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 3941053 - 3941187
Alignment:
Q  110 acaatgaattaaatagtattagaatcaataaatattaataatgacaatataagatttttatnnnnnnnntaatttaaa------gtttgaagttttctcg 203  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |        |||  ||||      ||||||||||| ||||    
T  3941053 acaattaattaaattgtattagaatcaataaatattaataatgacaatataaggtttttgtaaaaaaaataaaataaaataaaggtttgaagtttcctcg 3941152  T
Q  204 gcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||| |||| ||||||||||| |||||||    
T  3941153 gcagttaactaccgaagttttcctcggtagttaac 3941187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 471091 - 471133
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  471091 ttttctcggcagttaactcccgaggttttcctcggcagttaac 471133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 44336327 - 44336285
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  44336327 ttttctcggcagttaactaccgaggttttcctcggcagttaac 44336285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 36072449 - 36072405
Alignment:
Q  194 agttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||    
T  36072449 agttttttcggcagttaactaccgaggttttcctcggcagttaac 36072405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 3728809 - 3728771
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3728809 ctcggcagttaactaccgaggttttcctcggcagttaac 3728771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 3944048 - 3944010
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3944048 ctcggcagttaactaccgaggttttcctcggcagttaac 3944010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 3993842 - 3993880
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3993842 ctcggcagttaactaccgaggttttcctcggcagttaac 3993880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 6557993 - 6557951
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  6557993 ttttctcggcagttaactaccgagattttcctcggcagttaac 6557951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 8548668 - 8548706
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  8548668 ctcggcagttaactaccgaggttttcctcggcagttaac 8548706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 9711650 - 9711688
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  9711650 ctcggcagttaactcccgaggttttcctcggcagttaac 9711688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 13636121 - 13636159
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  13636121 ctcggcagttaactaccgaggttttcctcggcagttaac 13636159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 19161966 - 19161928
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  19161966 ctcggcagttaactcccgaggttttcctcggcagttaac 19161928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 22524204 - 22524162
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||| |||||||||||||||| |||||||    
T  22524204 ttttctcggcagttaactaccgaggttttcctcgggagttaac 22524162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 31783714 - 31783752
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  31783714 ctcggcagttaactcccgaggttttcctcggcagttaac 31783752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 38771703 - 38771665
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  38771703 ctcggcagttaactcccgaggttttcctcggcagttaac 38771665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 44470010 - 44470048
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  44470010 ctcggcagttaactcccgaggttttcctcggcagttaac 44470048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 46043597 - 46043543
Alignment:
Q  183 ttaaagtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||| ||||||||||| |||||||||||||| |||| ||||||||||| ||||||    
T  46043597 ttaaggtttgaagtttcctcggcagttaactaccgaagttttcctcggtagttaa 46043543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 13633942 - 13633905
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  13633942 tcggcagttaactaccgaggttttcctcggcagttaac 13633905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 19054246 - 19054287
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  19054246 tttctcggcagttaactaccgaggttttccttggcagttaac 19054287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 26633600 - 26633563
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  26633600 tcggcagttaactaccgaggttttcctcggcagttaac 26633563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 52802203 - 52802166
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  52802203 tcggcagttaactaccgaggttttcctcggcagttaac 52802166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 15051349 - 15051385
Alignment:
Q  202 cggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||| ||||||||||||||||||||||||    
T  15051349 cggcagttaactaccgaggttttcctcggcagttaac 15051385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 7981136 - 7981175
Alignment:
Q  198 ttctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  7981136 ttctcggcggttaactaccgaggttttcctcggcagttaa 7981175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 26879297 - 26879332
Alignment:
Q  203 ggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||| ||||||||||||||||||||||||    
T  26879297 ggcagttaactaccgaggttttcctcggcagttaac 26879332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 6562160 - 6562198
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  6562160 ctcggcagttaactaccgaggatttcctcggcagttaac 6562198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 9710652 - 9710614
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  9710652 ctcggcagttaactcccgaagttttcctcggcagttaac 9710614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 11183260 - 11183222
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  11183260 ctcgacagttaactaccgaggttttcctcggcagttaac 11183222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 13178127 - 13178169
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||||  ||||||||||||| |||||||||    
T  13178127 ttttctcggcagttaactctcgaggttttcctcagcagttaac 13178169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 19159697 - 19159659
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  19159697 ctcggcagttaactaccgaggttttccttggcagttaac 19159659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 20353934 - 20353972
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  20353934 ctcggcagttaactaccgaagttttcctcggcagttaac 20353972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 26445787 - 26445741
Alignment:
Q  86 ttgattatatttcctcataaaattacaatgaattaaatagtattaga 132  Q
    |||||||| ||| |||||| ||| |||||||||||||||||||||||    
T  26445787 ttgattatgttttctcatagaatcacaatgaattaaatagtattaga 26445741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 26606884 - 26606834
Alignment:
Q  188 gtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||| |||| |||||||||||||| |||| ||||||||||| |||||||    
T  26606884 gtttgaggtttcctcggcagttaactgccgaagttttcctcggtagttaac 26606834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 29622423 - 29622461
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  29622423 ctcggcagttaactaccgaggttttcctcggcaattaac 29622461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 38119614 - 38119648
Alignment:
Q  204 gcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  38119614 gcagttaactaccgaggttttcctcggcagttaac 38119648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 38690005 - 38689967
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  38690005 ctcggcagttaactaccgaggttttccttggcagttaac 38689967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 44598905 - 44598943
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  44598905 ctcggcagttaactcccgaagttttcctcggcagttaac 44598943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 50113385 - 50113343
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||| ||||| |||||||||||| |||||    
T  50113385 ttttctcggcagttaactaccgagattttcctcggcaattaac 50113343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 8460093 - 8460134
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||    
T  8460093 tttctcggcagttaactaccgagattttccttggcagttaac 8460134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 16270025 - 16270062
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  16270025 tcggcagttaactgccgaggttttcttcggcagttaac 16270062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 41804037 - 41804070
Alignment:
Q  205 cagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||| ||||||||||||||||||||||||    
T  41804037 cagttaactaccgaggttttcctcggcagttaac 41804070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 46141855 - 46141818
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  46141855 tcggcagttaactaccgatgttttcctcggcagttaac 46141818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 13173911 - 13173871
Alignment:
Q  198 ttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||| || |||||||||||||| ||||||    
T  13173911 ttctcggcagttaactgccaaggttttcctcggctgttaac 13173871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 15695871 - 15695831
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    ||||||||||||||||| |||| |||||||||| |||||||    
T  15695871 tttctcggcagttaactgccgaagttttcctcgacagttaa 15695831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 26454040 - 26454000
Alignment:
Q  90 ttatatttcctcataaaattacaatgaattaaatagtatta 130  Q
    |||| ||| |||||||||| |||||||||||||||||||||    
T  26454040 ttatgttttctcataaaatcacaatgaattaaatagtatta 26454000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 36076555 - 36076595
Alignment:
Q  198 ttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  36076555 ttctcggcagtttactagcgaggttttcctcggcagttaac 36076595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 50)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 21406468 - 21406382
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21406468 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattagaatcaataaatattaataatgacaatataaggttttt 21406382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 21800960 - 21800874
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21800960 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattagaatcaataaatattaataatgacaatataaggttttt 21800874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 44726695 - 44726609
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44726695 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagtttttt 44726609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 38135487 - 38135566
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataa 161  Q
    |||||||||||| |||||||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||||||||    
T  38135487 agtgttgattatgtttcctcataaaatcacaatcaattaaatagtattaaaatcgataaatattaataatgacaatataa 38135566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 44727384 - 44727464
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatc-aataaatattaataatgacaatataa 161  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||||||||||    
T  44727384 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattataatcaaataaatattcataatgacaatataa 44727464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 38134534 - 38134476
Alignment:
Q  110 acaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| |||||    
T  38134534 acaatgaattacatagtattagaatcaataaatattagtaacgacaatataaggttttt 38134476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 21835102 - 21835153
Alignment:
Q  110 acaatgaattaaatagtattagaatcaataaatattaataatgacaatataa 161  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||    
T  21835102 acaatgaattatatagtattagaatcaataaatattagtaatgacaaaataa 21835153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 184551 - 184589
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  184551 ctcggcagttaactaccgaggttttcctcggcagttaac 184589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 7344556 - 7344594
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  7344556 ctcggcagttaactcccgaggttttcctcggcagttaac 7344594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 8419478 - 8419440
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  8419478 ctcggcagttaactaccgaggttttcctcggcagttaac 8419440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 15030958 - 15030920
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  15030958 ctcggcagttaactcccgaggttttcctcggcagttaac 15030920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 21406353 - 21406303
Alignment:
Q  188 gtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||| |||||||||||||| |||| ||||||||||| |||||||    
T  21406353 gtttgaagtttcctcggcagttaactaccgaagttttcctcggtagttaac 21406303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 21800845 - 21800795
Alignment:
Q  188 gtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||| |||||||||||||| |||| ||||||||||| |||||||    
T  21800845 gtttgaagtttcctcggcagttaactaccgaagttttcctcggtagttaac 21800795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 22550864 - 22550902
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  22550864 ctcggcagttaactaccgaggttttcctcggcagttaac 22550902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 26451554 - 26451516
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  26451554 ctcggcagttaactaccgaggttttcctcggcagttaac 26451516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 26663032 - 26663070
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  26663032 ctcggcagttaactaccgaggttttcctcggcagttaac 26663070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 32375725 - 32375687
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  32375725 ctcggcagttaactaccgaggttttcctcggcagttaac 32375687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 35962381 - 35962343
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  35962381 ctcggcagttaactcccgaggttttcctcggcagttaac 35962343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 39601778 - 39601740
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  39601778 ctcggcagttaactcccgaggttttcctcggcagttaac 39601740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 40077249 - 40077287
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  40077249 ctcggcagttaactaccgaggttttcctcggcagttaac 40077287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 41016488 - 41016450
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  41016488 ctcggcagttaactaccgaggttttcctcggcagttaac 41016450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 42602534 - 42602496
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  42602534 ctcggcagttaactaccgaggttttcctcggcagttaac 42602496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 18438707 - 18438670
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  18438707 tcggcagttaactcccgaggttttcctcggcagttaac 18438670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 40039199 - 40039162
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||||||||||||||| |||||||    
T  40039199 tcggcagttaacttccgaggttttcctcggtagttaac 40039162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 41855445 - 41855404
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  41855445 tttctcggtagttaactaccgaggttttcctcggcagttaac 41855404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 18205862 - 18205822
Alignment:
Q  198 ttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  18205862 ttctcggcagttaactaccgaggttttccttggcagttaac 18205822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 22577741 - 22577701
Alignment:
Q  198 ttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  22577741 ttctcggcagttaactaccgaggttttcctcgacagttaac 22577701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 36677931 - 36677966
Alignment:
Q  203 ggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36677931 ggcagttaactaccgaggttttcctcggcagttaac 36677966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 483890 - 483852
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  483890 ctcggcagttaactaccgaggttttcctcggcacttaac 483852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 546424 - 546458
Alignment:
Q  204 gcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  546424 gcagttaactcccgaggttttcctcggcagttaac 546458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 1114817 - 1114779
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  1114817 ctcggcagttaactaccgaggatttcctcggcagttaac 1114779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 2146957 - 2146991
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagtt 235  Q
    ||||||||||||| |||||||||||||||||||||    
T  2146957 tcggcagttaactaccgaggttttcctcggcagtt 2146991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 17924282 - 17924320
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  17924282 ctcggcagttaactaccgaggtttttctcggcagttaac 17924320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 18441440 - 18441478
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  18441440 ctcggcagttaactgccgaggtttttctcggcagttaac 18441478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 22014320 - 22014282
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  22014320 ctcggtagttaactaccgaggttttcctcggcagttaac 22014282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 22519561 - 22519599
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  22519561 ctcggcagttaactaccgaggttttcctcggcacttaac 22519599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 34892808 - 34892846
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  34892808 ctcggcagttaactgccgaagttttcctcggcagttaac 34892846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 40740980 - 40740942
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  40740980 ctcggcagttaactgccgaagttttcctcggcagttaac 40740942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 43262495 - 43262457
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  43262495 ctcggcagttaactaccgaagttttcctcggcagttaac 43262457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 45066360 - 45066398
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  45066360 ctcggcagttaattaccgaggttttcctcggcagttaac 45066398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 7168165 - 7168124
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||| ||| |||| ||||||||||||||||||||||||    
T  7168165 tttctcggtagtcaactaccgaggttttcctcggcagttaac 7168124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 13782309 - 13782272
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  13782309 ctcggcagttaactgccgaagttttcctcggcagttaa 13782272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 15033146 - 15033183
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  15033146 ctcggcagttaactaccgaggtttccctcggcagttaa 15033183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 32383205 - 32383242
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  32383205 tcggcagttaactaccgaggttttcctcggtagttaac 32383242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 32437160 - 32437197
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  32437160 tcggcagttaactaccgaggttttcctcggtagttaac 32437197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 34366984 - 34366947
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  34366984 tcggcagttaactaccgaggttttcctcggaagttaac 34366947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 39491141 - 39491174
Alignment:
Q  205 cagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||| ||||||||||||||||||    
T  39491141 cagttaacttccgagattttcctcggcagttaac 39491174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 42731902 - 42731861
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||| |||| ||||||||||||| |||||    
T  42731902 tttctcggcagttaactgccgaagttttcctcggcaattaac 42731861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 41274668 - 41274628
Alignment:
Q  198 ttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||| ||||| |||||||||||| |||||    
T  41274668 ttctcggcagttaactaccgagattttcctcggcaattaac 41274628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 43263181 - 43263217
Alignment:
Q  132 aatcaataaatattaataatgacaatataagattttt 168  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  43263181 aatcaataaatattaataatgacaaaatatgattttt 43263217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 32222727 - 32222641
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32222727 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagtttttt 32222641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 9048285 - 9048199
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  9048285 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattagaatcaataaatattaataatgataatataagtttttt 9048199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 238
Target Start/End: Original strand, 9048965 - 9049121
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatc-aataaatattaataatgacaatataagatttttatnnnnnnnnta 180  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||| |         |    
T  9048965 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattagaatcaaataaatattaataatgacaatataatttttttgtgaaaaaaaaa 9049064  T
Q  181 atttaaagtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    | |||| |||||||| || |||||||||||||| |||| ||||||||||| |||||||    
T  9049065 aattaaggtttgaag-ttcctcggcagttaactaccgaagttttcctcggtagttaac 9049121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 32223394 - 32223542
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatc-aataaatattaataatgacaatataagatttttatnnnnnnnnta 180  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||  ||||| |         |    
T  32223394 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattagaatcaaataaataataataatgacaatataatttttttgtgaaaaaaa-a 32223492  T
Q  181 atttaaagtttgaagttttctcggcagttaacttccgaggttttcctcgg 230  Q
    | |||| ||||||||||| |||||||||||||| |||| |||||||||||    
T  32223493 aattaaggtttgaagtttcctcggcagttaactaccgaagttttcctcgg 32223542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 35242107 - 35242029
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatata 160  Q
    |||||||||||| |||| || |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35242107 agtgttgattatgtttcttcgtaaaatcacaatgagttaaatagtattagaatcaataaatattaataatgacaatata 35242029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 9048166 - 9048111
Alignment:
Q  183 ttaaagtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||| ||||||||||| |||||||||||||| |||| ||||||||||| |||||||    
T  9048166 ttaaggtttgaagtttcctcggcagttaactaccgaagttttcctcggtagttaac 9048111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 26351086 - 26351133
Alignment:
Q  192 gaagttttc-tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  26351086 gaagttttcctcggcagttaactcccgaggttttcctcggcagttaac 26351133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 6204901 - 6204863
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  6204901 ctcggcagttaactaccgaggttttcctcggcagttaac 6204863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 11691868 - 11691830
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11691868 ctcggcagttaactaccgaggttttcctcggcagttaac 11691830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 13382703 - 13382665
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  13382703 ctcggcagttaactaccgaggttttcctcggcagttaac 13382665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 22305182 - 22305144
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  22305182 ctcggcagttaactaccgaggttttcctcggcagttaac 22305144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 23958968 - 23958926
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||| |||||||||||||||||| |||||    
T  23958968 ttttctcggcagttaactaccgaggttttcctcggcatttaac 23958926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 26712122 - 26712084
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  26712122 ctcggcagttaactaccgaggttttcctcggcagttaac 26712084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 28249959 - 28249921
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  28249959 ctcggcagttaactaccgaggttttcctcggcagttaac 28249921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 18351643 - 18351680
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  18351643 tcggcagttaactaccgaggttttcctcggcagttaac 18351680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 18606121 - 18606080
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  18606121 tttctcggcagttaagtaccgaggttttcctcggcagttaac 18606080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 26712179 - 26712218
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagtt 235  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  26712179 ttttctcggcagttaactaccgaggttttcttcggcagtt 26712218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 3177639 - 3177589
Alignment:
Q  188 gtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||| ||||||| |||||| |||| ||||||||||| |||||||    
T  3177639 gtttgaagtttcctcggcacttaactgccgaagttttcctcgggagttaac 3177589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 6207059 - 6207097
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  6207059 ctcggcagttaactaccgaggttttcctcggcacttaac 6207097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 11694026 - 11694064
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  11694026 ctcggcagttaactaccgaggttttcctcggcaattaac 11694064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 11840249 - 11840287
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  11840249 ctcggcagttaactaccgaggttttcctcgacagttaac 11840287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 13388707 - 13388745
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  13388707 ctcggcagttaactaccgaggttttcctcgacagttaac 13388745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 15546388 - 15546426
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  15546388 ctcggcagttaactgccgaagttttcctcggcagttaac 15546426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 17597523 - 17597561
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  17597523 ctcggcagttaactcccgaagttttcctcggcagttaac 17597561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 27616789 - 27616751
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  27616789 ctcggcagttaactaccgaggttttcttcggcagttaac 27616751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 29076322 - 29076360
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  29076322 ctcggcagttaactaccgaggttttcctcagcagttaac 29076360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 29109855 - 29109893
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  29109855 ctcggcagttaactaccgaggttttcctcagcagttaac 29109893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 29111295 - 29111333
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  29111295 ctcggcagttaactaccgaggttttcctcagcagttaac 29111333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 31768827 - 31768789
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  31768827 ctcggcagttaactaccgaggttttcctcggcaattaac 31768789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 14011791 - 14011754
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  14011791 ctcggtagttaactgccgaggttttcctcggcagttaa 14011754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 17338760 - 17338801
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||| | |||| |||||||||||||||||||    
T  17338760 tttctcggcagttaattgccgaagttttcctcggcagttaac 17338801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 24721962 - 24721995
Alignment:
Q  205 cagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||| ||||||||||||||||||||||||    
T  24721962 cagttaactaccgaggttttcctcggcagttaac 24721995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 26712223 - 26712260
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  26712223 tcggtagttaactaccgaggttttcctcggcagttaac 26712260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 35096711 - 35096674
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  35096711 tcggcagttaactgccgaagttttcctcggcagttaac 35096674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 26423011 - 26423047
Alignment:
Q  202 cggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  26423011 cggcagttaacttccgaggatttccttggcagttaac 26423047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 35243083 - 35243115
Alignment:
Q  127 attagaatcaataaatattaataatgacaatat 159  Q
    |||||||||||||||||||| ||||||||||||    
T  35243083 attagaatcaataaatattagtaatgacaatat 35243115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 70)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 54964797 - 54964883
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  54964797 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattagaatcaataaatattaataatgacaatataaggttttt 54964883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 33471661 - 33471575
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| |||||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||| ||| |||| |||||    
T  33471661 agtgttgattatgtttcctcatagaatcacaatgaattaaataatattaaaatcaataaatattaataatgataatttaaggttttt 33471575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 4015119 - 4015166
Alignment:
Q  192 gaagttttc-tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4015119 gaagttttcctcggcagttaacttccgaggttttcctcggcagttaac 4015166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 48250864 - 48250906
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  48250864 ttttctcggcagttaactcccgaggttttcctcggcagttaac 48250906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 1293451 - 1293413
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1293451 ctcggcagttaactcccgaggttttcctcggcagttaac 1293413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 2647698 - 2647736
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  2647698 ctcggcagttaactaccgaggttttcctcggcagttaac 2647736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 2743472 - 2743434
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  2743472 ctcggcagttaactcccgaggttttcctcggcagttaac 2743434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 3953214 - 3953252
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3953214 ctcggcagttaactcccgaggttttcctcggcagttaac 3953252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 4002504 - 4002542
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  4002504 ctcggcagttaactcccgaggttttcctcggcagttaac 4002542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 8156582 - 8156544
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  8156582 ctcggcagttaactgccgaggttttcctcggcagttaac 8156544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 20918010 - 20918048
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  20918010 ctcggcagttaactaccgaggttttcctcggcagttaac 20918048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 20926972 - 20927010
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  20926972 ctcggcagttaactaccgaggttttcctcggcagttaac 20927010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 30943263 - 30943225
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  30943263 ctcggcagttaactaccgaggttttcctcggcagttaac 30943225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 34049154 - 34049116
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  34049154 ctcggcagttaactaccgaggttttcctcggcagttaac 34049116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 35743581 - 35743619
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  35743581 ctcggcagttaactaccgaggttttcctcggcagttaac 35743619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 36134397 - 36134359
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  36134397 ctcggcagttaactcccgaggttttcctcggcagttaac 36134359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 41803072 - 41803034
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  41803072 ctcggcagttaactaccgaggttttcctcggcagttaac 41803034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 41844363 - 41844401
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  41844363 ctcggcagttaactaccgaggttttcctcggcagttaac 41844401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 43476266 - 43476228
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  43476266 ctcggcagttaactaccgaggttttcctcggcagttaac 43476228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 44227186 - 44227148
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  44227186 ctcggcagttaactaccgaggttttcctcggcagttaac 44227148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 46697785 - 46697747
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  46697785 ctcggcagttaactaccgaggttttcctcggcagttaac 46697747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 50477254 - 50477216
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  50477254 ctcggcagttaactaccgaggttttcctcggcagttaac 50477216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 54389869 - 54389831
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  54389869 ctcggcagttaactaccgaggttttcctcggcagttaac 54389831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 10492860 - 10492909
Alignment:
Q  188 gtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||||| |||| |||||||||||||| |||| ||||||||||||||||||    
T  10492860 gtttgaggtttcctcggcagttaactgccgaagttttcctcggcagttaa 10492909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 14043894 - 14043935
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  14043894 tttctcggcagttaactgccgaagttttcctcggcagttaac 14043935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 19440329 - 19440292
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  19440329 tcggcagttaactaccgaggttttcctcggcagttaac 19440292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 29918337 - 29918378
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  29918337 tttctcggcagttaactaacgaggttttcctcggcagttaac 29918378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 29967490 - 29967531
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  29967490 tttctcggcagttaactaacgaggttttcctcggcagttaac 29967531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 36134270 - 36134311
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  36134270 ttttctcggcagttaactaccgaggttttccttggcagttaa 36134311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 41579724 - 41579761
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  41579724 tcggcagttaactaccgaggttttcctcggcagttaac 41579761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 8475910 - 8475862
Alignment:
Q  191 tgaagttttc-tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||| || |||||||||| ||||||||||||||||||||||||    
T  8475910 tgaagttttcctcagcagttaactaccgaggttttcctcggcagttaac 8475862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 29929503 - 29929463
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  29929503 tttctcggcagttaactatcgaggttttcctcggcagttaa 29929463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 29978657 - 29978617
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  29978657 tttctcggcagttaactatcgaggttttcctcggcagttaa 29978617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 42760210 - 42760246
Alignment:
Q  202 cggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||| ||||||||||||||||||||||||    
T  42760210 cggcagttaactaccgaggttttcctcggcagttaac 42760246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 235
Target Start/End: Complemental strand, 2271430 - 2271395
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagtt 235  Q
    |||||||||||||| |||||||||||||||||||||    
T  2271430 ctcggcagttaactcccgaggttttcctcggcagtt 2271395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 3501897 - 3501932
Alignment:
Q  203 ggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3501897 ggcagttaactaccgaggttttcctcggcagttaac 3501932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 40877760 - 40877807
Alignment:
Q  188 gtttgaagttttctcggcagttaacttccgaggttttcctcggcagtt 235  Q
    ||||||||||| |||||||||||||| |||| ||||||||||| ||||    
T  40877760 gtttgaagtttcctcggcagttaactgccgaagttttcctcggtagtt 40877807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 42756234 - 42756195
Alignment:
Q  199 tctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  42756234 tctcggcagttaactctcgaggttttcctcggcagttaac 42756195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 600543 - 600581
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  600543 ctcggcagttaactaccgaggttttcctcgacagttaac 600581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 2950440 - 2950402
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  2950440 ctcggcagttaactaccgaggttttcctcggcacttaac 2950402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 4004802 - 4004840
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  4004802 ctcggcagttaagtaccgaggttttcctcggcagttaac 4004840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 6143745 - 6143707
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  6143745 ctcggcagttaactgccgaagttttcctcggcagttaac 6143707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 6489403 - 6489365
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  6489403 ctcggcagttaactaccgaggatttcctcggcagttaac 6489365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 6745325 - 6745363
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  6745325 ctcggcagttaactaccgaggttttccttggcagttaac 6745363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 6928723 - 6928685
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagt 234  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  6928723 ttttctcggcagtaaacttccgaggttttcttcggcagt 6928685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 16484455 - 16484493
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  16484455 ctcggcagttaactcccgaagttttcctcggcagttaac 16484493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 34691699 - 34691661
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  34691699 ctcggcagttaactaccgaggttttcctcgacagttaac 34691661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 42165237 - 42165199
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  42165237 ctcggcagttaactaccgaggttttcctcggcaattaac 42165199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 43478829 - 43478867
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  43478829 ctcggcagttaactaccgaagttttcctcggcagttaac 43478867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 46406590 - 46406628
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  46406590 ctcggcagttaactaccgaggttttcctcggcacttaac 46406628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 46989617 - 46989583
Alignment:
Q  204 gcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  46989617 gcagttaactaccgaggttttcctcggcagttaac 46989583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 48246486 - 48246448
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  48246486 ctcggcagttaactaccgaggttttcctcgacagttaac 48246448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 48566438 - 48566404
Alignment:
Q  204 gcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  48566438 gcagttaactaccgaggttttcctcggcagttaac 48566404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 49138688 - 49138650
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  49138688 ctcggcagttaactaccgaggttttcctcggcacttaac 49138650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 49140846 - 49140884
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  49140846 ctcggcagttaactactgaggttttcctcggcagttaac 49140884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 49144455 - 49144493
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  49144455 ctcggcagttaactaccgaggttttcttcggcagttaac 49144493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 51402397 - 51402435
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  51402397 ctcggcagttaactaccgaggttttcctcgacagttaac 51402435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 54392027 - 54392065
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  54392027 ctcggcagttaactaccgaggttttcctcggcacttaac 54392065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 55385211 - 55385173
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  55385211 ctcgacagttaactaccgaggttttcctcggcagttaac 55385173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 1294077 - 1294114
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  1294077 tcggcagttaactgccgaggttttcctcggaagttaac 1294114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 2062463 - 2062422
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||| |||| |||||||||| ||||||||    
T  2062463 tttctcggcagttaactgccgaagttttcctcgacagttaac 2062422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 11270280 - 11270321
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||| |||| |||||||| ||||||||||    
T  11270280 tttctcggcagttaactgccgaagttttccttggcagttaac 11270321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 13896876 - 13896913
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  13896876 tcggcagttaactaccgaggttttcctcgacagttaac 13896913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #64
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 19341582 - 19341631
Alignment:
Q  189 tttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||| |||| |||||||||||||| |||| ||||||||||| |||||||    
T  19341582 tttgaggtttcctcggcagttaactgccgaagttttcctcggtagttaac 19341631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #65
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 49268845 - 49268882
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  49268845 tcggcagttaactaccgatgttttcctcggcagttaac 49268882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #66
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 50604420 - 50604457
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  50604420 tcggcagttaactgccgaggttttcctcggtagttaac 50604457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #67
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 28611097 - 28611137
Alignment:
Q  198 ttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||| |||  |||||||||||||||||||    
T  28611097 ttctcggcagttaactaccgttgttttcctcggcagttaac 28611137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #68
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 34712760 - 34712796
Alignment:
Q  202 cggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||| |||||||||||||||| |||||||    
T  34712760 cggcagttaactgccgaggttttcctcgggagttaac 34712796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #69
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 36719366 - 36719330
Alignment:
Q  132 aatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||||||||||||||||| |||| |||||    
T  36719366 aatcaataaatattaataatgacaatttaaggttttt 36719330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #70
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 41612399 - 41612435
Alignment:
Q  202 cggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||| |||||| |||||||||||||||||    
T  41612399 cggcagttaactaccgaggatttcctcggcagttaac 41612435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 61)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 19994164 - 19994244
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataag 162  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19994164 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattagaatcaataaatattaataatgacaatataag 19994244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 17343287 - 17343373
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17343287 agtgttgattatgttttctaataaaatcacaatgaattaaatagtattagaatcaataaatattaataatgacaatataaggttttt 17343373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 238
Target Start/End: Complemental strand, 17342307 - 17342178
Alignment:
Q  110 acaatgaattaaatagtattagaatcaataaatattaataatgacaatataagatttttat-nnnnnnnntaatttaaagtttgaagttttctcggcagt 208  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |         ||| |||| |||||||||||||||||||||    
T  17342307 acaatgaattaaatagtattaaaatcaataaatattaataatgacaatataagatttttgtaaaaataaataaattaaggtttgaagttttctcggcagt 17342208  T
Q  209 taacttccgaggttttcctcggcagttaac 238  Q
    ||||| |||| ||||| ||||| |||||||    
T  17342207 taactaccgaagtttttctcggtagttaac 17342178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 9473053 - 9472973
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataag 162  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  9473053 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattaaaatcaacaaatattaataatgacaatttaag 9472973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 9473539 - 9473625
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| |||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||||| |||| |||||    
T  9473539 agtgttgattatgtttcctcatagaatcacaatgaattaaatagtattaaaattaataaatattaataatgacaatttaaggttttt 9473625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 19993220 - 19993161
Alignment:
Q  110 acaatgaattaaatagtattagaatcaataaatatt-aataatgacaatataagattttt 168  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  19993220 acaatgaattaaatagtattagaatcaataaatattaaataatgacaatataaggttttt 19993161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 33383878 - 33383841
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33383878 tcggcagttaacttccgaggttttcctcggcagttaac 33383841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 958593 - 958631
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  958593 ctcggcagttaactaccgaggttttcctcggcagttaac 958631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 6178109 - 6178147
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  6178109 ctcggcagttaactaccgaggttttcctcggcagttaac 6178147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 9890068 - 9890030
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  9890068 ctcggcagttaactaccgaggttttcctcggcagttaac 9890030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 15995796 - 15995758
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  15995796 ctcggcagttaactaccgaggttttcctcggcagttaac 15995758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 19069261 - 19069223
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  19069261 ctcggcagttaactaccgaggttttcctcggcagttaac 19069223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 21022887 - 21022925
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  21022887 ctcggcagttaactaccgaggttttcctcggcagttaac 21022925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 26932658 - 26932620
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  26932658 ctcggcagttaactaccgaggttttcctcggcagttaac 26932620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 28234494 - 28234452
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||| |||||||||||||||||| |||||    
T  28234494 ttttctcggcagttaactaccgaggttttcctcggcatttaac 28234452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 30726740 - 30726778
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  30726740 ctcggcagttaactaccgaggttttcctcggcagttaac 30726778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 31425317 - 31425355
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  31425317 ctcggcagttaactaccgaggttttcctcggcagttaac 31425355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 37022056 - 37022098
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||| |||||||||||||||| |||||||    
T  37022056 ttttctcggcagttaactgccgaggttttcctcggtagttaac 37022098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 37563279 - 37563317
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  37563279 ctcggcagttaactaccgaggttttcctcggcagttaac 37563317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 39773478 - 39773440
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  39773478 ctcggcagttaactaccgaggttttcctcggcagttaac 39773440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 40358279 - 40358317
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  40358279 ctcggcagttaactaccgaggttttcctcggcagttaac 40358317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 49094158 - 49094120
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  49094158 ctcggcagttaactaccgaggttttcctcggcagttaac 49094120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 49563918 - 49563876
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||| ||||||| ||||||||||||||||||||||||    
T  49563918 ttttctcggccgttaactaccgaggttttcctcggcagttaac 49563876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 54634014 - 54634052
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  54634014 ctcggcagttaactaccgaggttttcctcggcagttaac 54634052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 55793994 - 55793956
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  55793994 ctcggcagttaactcccgaggttttcctcggcagttaac 55793956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 11494616 - 11494579
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  11494616 tcggcagttaactaccgaggttttcctcggcagttaac 11494579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 15999798 - 15999835
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||||||||||||| |||||||||||||||||||||||    
T  15999798 ctcggcagttaactaccgaggttttcctcggcagttaa 15999835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 39590568 - 39590605
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  39590568 tcggcagttaactaccgaggttttcctcggcagttaac 39590605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 21018004 - 21018040
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    ||||||||||||| |||||||||||||||||||||||    
T  21018004 tcggcagttaactgccgaggttttcctcggcagttaa 21018040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 56565840 - 56565793
Alignment:
Q  192 gaagttttc-tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||||    
T  56565840 gaagttttcctcggtagttaactcccgaggttttcctcggcagttaac 56565793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 67666 - 67628
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  67666 ctcggcagttaactaccgaggttttcctcgacagttaac 67628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 1089583 - 1089621
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  1089583 ctcggcagttaactaccgaggttttcctcggcatttaac 1089621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 8109461 - 8109427
Alignment:
Q  204 gcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  8109461 gcagttaactcccgaggttttcctcggcagttaac 8109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 11084006 - 11084044
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  11084006 ctcggcagttaactgccgaggttttcctcgggagttaac 11084044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 16984160 - 16984198
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  16984160 ctcggcagttaactatcgaggttttcctcggcagttaac 16984198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 20208580 - 20208546
Alignment:
Q  204 gcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  20208580 gcagttaactaccgaggttttcctcggcagttaac 20208546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 21018108 - 21018070
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  21018108 ctcggcagttaactaccgaggttttcttcggcagttaac 21018070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 40354679 - 40354641
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  40354679 ctcggcagttaactaccgaggttttcttcggcagttaac 40354641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 41793438 - 41793400
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  41793438 ctcggcagttaactaccgaggttttcctcggcacttaac 41793400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 41795355 - 41795393
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  41795355 ctcggcagttaactaacgaggttttcctcggcagttaac 41795393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 49169096 - 49169134
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  49169096 ctcggcagttaactaccgaggtattcctcggcagttaac 49169134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 51492145 - 51492107
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  51492145 ctcggcagttaactaccgaggttttcctaggcagttaac 51492107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 55407792 - 55407830
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  55407792 ctcggcagttaactaccgagattttcctcggcagttaac 55407830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 56138326 - 56138288
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  56138326 ctcggcagttaactactgaggttttcctcggcagttaac 56138288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 955865 - 955828
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  955865 tcggcagttaactaccgaggtttttctcggcagttaac 955828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 4783719 - 4783682
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  4783719 tcggcagttaactgccgaagttttcctcggcagttaac 4783682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 16983595 - 16983558
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  16983595 tcggcagttaactaccgaggtttttctcggcagttaac 16983558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 17343386 - 17343431
Alignment:
Q  185 aaagtttgaagttttctcggcagttaacttccgaggttttcctcgg 230  Q
    ||||||||||||||||||||||||||||| | || |||||| ||||    
T  17343386 aaagtttgaagttttctcggcagttaactacagaagttttcttcgg 17343431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 19073655 - 19073692
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  19073655 tcggcagttaactaccgaggatttcctcggcagttaac 19073692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 21470980 - 21470939
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||| |||||||||||||| || ||||||    
T  21470980 tttctcggcagttaactaccgaggttttcctctgcggttaac 21470939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 29700302 - 29700339
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  29700302 tcggcaattaactaccgaggttttcctcggcagttaac 29700339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 33409596 - 33409559
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  33409596 tcggcagttaactgccgaggttttcctcgggagttaac 33409559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 33410229 - 33410266
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  33410229 tcggcagttaactgccgaggttttcctcgggagttaac 33410266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 34151687 - 34151650
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  34151687 tcggcagtttactaccgaggttttcctcggcagttaac 34151650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 37563139 - 37563102
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  37563139 ctcggtagttaactaccgaggttttcctcggcagttaa 37563102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 37959720 - 37959757
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  37959720 tcggcagttaactaccgatgttttcctcggcagttaac 37959757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 49096317 - 49096354
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  49096317 ctcggcagttaactaccgaggttttcctcggcacttaa 49096354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 38368308 - 38368264
Alignment:
Q  194 agttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||| |||| ||| |||| |||||||||||||||||||    
T  38368308 agttttctcggtagtttactaccgaagttttcctcggcagttaac 38368264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 44680116 - 44680080
Alignment:
Q  202 cggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||| |||||| |||||||||||||||||    
T  44680116 cggcagttaactaccgaggatttcctcggcagttaac 44680080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 52529281 - 52529249
Alignment:
Q  206 agttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||| ||||||||||||||||||||||||    
T  52529281 agttaactaccgaggttttcctcggcagttaac 52529249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 55704663 - 55704699
Alignment:
Q  132 aatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||||||||||||||||| || |||||||    
T  55704663 aatcaataaatattaataatgacaatttatgattttt 55704699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 49)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 43258613 - 43258696
Alignment:
Q  84 tgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagatttt 167  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43258613 tgttgattatgtttcctcataaaatcacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagttttt 43258696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 42176217 - 42176134
Alignment:
Q  85 gttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  42176217 gttgattatgtttccttataaaatcacaatgaattaaatagtattagaatcaataaatattaataataacaatataaggttttt 42176134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 43257913 - 43257837
Alignment:
Q  86 ttgattatatttcctcataaaattacaatgaattaaatagtattagaatc-aataaatattaataatgacaatataa 161  Q
    |||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43257913 ttgattatgtttcatcataaaatcacaatgaattaaatagtattagaatcaaataaatattaataatgacaatataa 43257837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 42177117 - 42177175
Alignment:
Q  110 acaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  42177117 acaatgaattaaatagtattagaatcaataaatattagtaatgacaatataaggttttt 42177175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 3795411 - 3795373
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  3795411 ctcggcagttaacttccaaggttttcctcggcagttaac 3795373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 3937851 - 3937889
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  3937851 ctcggcagttaacttccgaggtttacctcggcagttaac 3937889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 5351731 - 5351769
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  5351731 ctcggcagttaactaccgaggttttcctcggcagttaac 5351769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 17424206 - 17424168
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  17424206 ctcggcagttaactaccgaggttttcctcggcagttaac 17424168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 22003400 - 22003438
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  22003400 ctcggcagttaactaccgaggttttcctcggcagttaac 22003438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 25184829 - 25184867
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  25184829 ctcggcagttaactaccgaggttttcctcggcagttaac 25184867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 28468715 - 28468677
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  28468715 ctcggcagttaactaccgaggttttcctcggcagttaac 28468677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 29397984 - 29397946
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  29397984 ctcggcagttaactcccgaggttttcctcggcagttaac 29397946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 43536176 - 43536138
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  43536176 ctcggcagttaactaccgaggttttcctcggcagttaac 43536138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 43982273 - 43982235
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  43982273 ctcggcagttaactaccgaggttttcctcggcagttaac 43982235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 19187219 - 19187260
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  19187219 tttctcggcagttaactaccgaggttttcctcggcaggtaac 19187260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 23409501 - 23409538
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  23409501 tcggcagtttacttccgaggttttcctcggcagttaac 23409538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 10825296 - 10825256
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagtta 236  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  10825296 ttttctcggcagttaactgccgaggttttcctcgacagtta 10825256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 34921756 - 34921796
Alignment:
Q  198 ttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||| |||||||||||||| |||||||||    
T  34921756 ttctcggcagttaactaccgaggttttcctcagcagttaac 34921796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 41008924 - 41008964
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  41008924 tttctcggcagttaactaccgaagttttcctcggcagttaa 41008964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 45475516 - 45475476
Alignment:
Q  198 ttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  45475516 ttctcggaagttaactaccgaggttttcctcggcagttaac 45475476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 28477069 - 28477104
Alignment:
Q  203 ggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||| ||||||||||||||||||||||||    
T  28477069 ggcagttaactaccgaggttttcctcggcagttaac 28477104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 43258715 - 43258770
Alignment:
Q  183 ttaaagtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||| |||||||||||||| || | |||||| |||| |||||||    
T  43258715 ttaaagtttgaagtttcctcggcagttaactaccaaagttttcttcggtagttaac 43258770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 3935937 - 3935899
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  3935937 ctcggcagttaactaccgaggttttcctcggcacttaac 3935899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 3943191 - 3943229
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  3943191 ctcggcagttaactaccgaggtttttctcggcagttaac 3943229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 7189950 - 7189988
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  7189950 ctcggcagttaactaccgaagttttcctcggcagttaac 7189988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 7263091 - 7263053
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  7263091 ctcggcagttaactcccgaggatttcctcggcagttaac 7263053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 14456576 - 14456538
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  14456576 ctcggtagttaactgccgaggttttcctcggcagttaac 14456538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 18000306 - 18000268
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  18000306 ctcgccagttaactaccgaggttttcctcggcagttaac 18000268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 23346854 - 23346816
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  23346854 ctcggcagttaactaccgaggttttccttggcagttaac 23346816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 25964889 - 25964847
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||  |||||| ||||||||||||||||||||||||    
T  25964889 ttttctcggctattaactaccgaggttttcctcggcagttaac 25964847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 27276373 - 27276411
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  27276373 ctcggcaattaactcccgaggttttcctcggcagttaac 27276411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 30273149 - 30273187
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  30273149 ctcggcaattaactaccgaggttttcctcggcagttaac 30273187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 30493433 - 30493395
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  30493433 ctcggcagttaactaccgagattttcctcggcagttaac 30493395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 33222690 - 33222652
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  33222690 ctcggcagttaactgccgaagttttcctcggcagttaac 33222652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 34639309 - 34639351
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||| |||| ||||||||| |||||||||    
T  34639309 ttttctcggcagttaactcccgatgttttcctcagcagttaac 34639351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 39798517 - 39798479
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  39798517 ctcggcagttaactcccgaggatttcctcggcagttaac 39798479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 41183223 - 41183261
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  41183223 ctcggcagttaactaccgaggttttcctcggtagttaac 41183261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 41500233 - 41500271
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  41500233 ctcggcagttaactaccgaggtttttctcggcagttaac 41500271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 42499860 - 42499822
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  42499860 ctcggcagttaactaccgaggttttcctcggcacttaac 42499822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 44100797 - 44100835
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  44100797 ctcggtagttaactaccgaggttttcctcggcagttaac 44100835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 2271733 - 2271774
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||| |||| |||||||||| ||||||||    
T  2271733 tttctcggcagttaactgccgaagttttcctcgacagttaac 2271774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 28138654 - 28138617
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  28138654 ctcggcagttaactgccgaagttttcctcggcagttaa 28138617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 40221130 - 40221167
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  40221130 tcggcagttaactgccgaggttttcctcggtagttaac 40221167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 41565391 - 41565354
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  41565391 tcggcagttaactgccgaggttttcctcggtagttaac 41565354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 43984301 - 43984338
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  43984301 tcggcagttaactaccgaggttttcctcggcacttaac 43984338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 2983472 - 2983436
Alignment:
Q  202 cggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||| |||||||||||||||| |||||||    
T  2983472 cggcagttaactgccgaggttttcctcggtagttaac 2983436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 12908426 - 12908466
Alignment:
Q  198 ttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||  | |||||||||||||||||||||    
T  12908426 ttctcggcagttaactatcaaggttttcctcggcagttaac 12908466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 29407045 - 29407009
Alignment:
Q  201 tcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  29407045 tcggcagttaactgccgaagttttcctcggcagttaa 29407009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 35490774 - 35490742
Alignment:
Q  206 agttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||| ||||||||||||||||||||||||    
T  35490774 agttaactaccgaggttttcctcggcagttaac 35490742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 40142536 - 40142622
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  40142536 agtgttgattatgtttcctcataaaatcacaatgaattaaatagtattagaatcaataaatattaataatgataatataaggttttt 40142622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 42024965 - 42025051
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| ||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| |||||    
T  42024965 agtgttgattatgtttactcatagaattacaatgaattaaatagtattaaaatcaataaatattaataatgataatttaaggttttt 42025051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 42024483 - 42024399
Alignment:
Q  84 tgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||||| |||||| ||  ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  42024483 tgttgattatattttctcatagaaccacaataaattaaatagtattaaaatcaataaatattaataatgacaatttaagattttt 42024399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 7611631 - 7611713
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagt---attagaatcaataaatattaataatgacaatataa 161  Q
    |||||||||||| ||| | |||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  7611631 agtgttgattatgttttcccataaaatcacaatgaattaaatagtagtattagaatcaataaatattaataatgacaatataa 7611713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 40141585 - 40141534
Alignment:
Q  110 acaatgaattaaatagtattagaatcaataaatattaataatgacaatataa 161  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| |||||||    
T  40141585 acaatgaattaaataatattagaattaataaatattaataatgataatataa 40141534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 41884125 - 41884163
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41884125 ctcggcagttaacttccgaggttttcctcggcagttaac 41884163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 47061003 - 47060962
Alignment:
Q  197 tttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  47061003 tttctcggcagttaactaccgaggttttcctcggcagttaac 47060962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 42795107 - 42795150
Alignment:
Q  195 gttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||||||||||||||||| |||| |||||||||||||||||||    
T  42795107 gttttctcggcagttaactgccgaagttttcctcggcagttaac 42795150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 9367723 - 9367761
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  9367723 ctcggcagttaactaccgaggttttcctcggcagttaac 9367761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 15070429 - 15070391
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  15070429 ctcggcagttaactaccgaggttttcctcggcagttaac 15070391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 17840889 - 17840927
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  17840889 ctcggcagttaactaccgaggttttcctcggcagttaac 17840927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 18105447 - 18105409
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  18105447 ctcggcagttaactaccgaggttttcctcggcagttaac 18105409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 30355238 - 30355276
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  30355238 ctcggcagttaactaccgaggttttcctcggcagttaac 30355276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 34742394 - 34742432
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  34742394 ctcgacagttaacttccgaggttttcctcggcagttaac 34742432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 35606863 - 35606825
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  35606863 ctcggcagttaactaccgaggttttcctcggcagttaac 35606825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 42499483 - 42499445
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  42499483 ctcggcagttaactaccgaggttttcctcggcagttaac 42499445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 45767860 - 45767898
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  45767860 ctcggcagttaactaccgaggttttcctcggcagttaac 45767898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 10705328 - 10705284
Alignment:
Q  194 agttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||||| || ||||||| |||||||||||||    
T  10705328 agttttctcggcagttaactcccaaggtttttctcggcagttaac 10705284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 36781446 - 36781486
Alignment:
Q  198 ttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  36781446 ttctcggcagttaactgccgaggttttcctcgggagttaac 36781486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 7953721 - 7953768
Alignment:
Q  188 gtttgaagttttctcggcagttaacttccgaggttttcctcggcagtt 235  Q
    ||||||||||| |||||||||||||| |||| ||||||||||| ||||    
T  7953721 gtttgaagtttcctcggcagttaactgccgaagttttcctcggtagtt 7953768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 38555392 - 38555450
Alignment:
Q  179 taatttaaagtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||| | ||||||| |||| ||||||||||||| |||| |||||||||||||||||||    
T  38555392 taattttaggtttgaaatttt-tcggcagttaactgccgaagttttcctcggcagttaac 38555450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 9365753 - 9365715
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  9365753 ctcggcagttaactaccgaggttttcctcggcacttaac 9365715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 9494805 - 9494843
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  9494805 ctcgacagttaactcccgaggttttcctcggcagttaac 9494843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 10098116 - 10098154
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  10098116 ctcgtcagttaactcccgaggttttcctcggcagttaac 10098154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 10098440 - 10098402
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  10098440 ctcggcagttaactaccgaggttttcctcggcacttaac 10098402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 14412344 - 14412401
Alignment:
Q  179 taatttaaagtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||||| ||||||||| ||  |||||||||||||| |||| ||||||||||||||||||    
T  14412344 taatttcaagtttgaaattc-ctcggcagttaactgccgaagttttcctcggcagttaa 14412401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 15074227 - 15074265
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  15074227 ctcgacagttaactaccgaggttttcctcggcagttaac 15074265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 17834561 - 17834523
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  17834561 ctcggcagttaactaccgaagttttcctcggcagttaac 17834523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 29112459 - 29112409
Alignment:
Q  188 gtttgaagttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||| |||| ||| |||||||||| |||| |||||||||||||||||||    
T  29112459 gtttgaggtttcctcagcagttaactgccgaagttttcctcggcagttaac 29112409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 30791007 - 30791045
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  30791007 ctcggcagttaactaccgaggttttcctcggtagttaac 30791045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 34738438 - 34738400
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  34738438 ctcggcagttaactaccgaggttttcctcggcatttaac 34738400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 37340376 - 37340338
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  37340376 ctcggcagttaactaccgaggtttttctcggcagttaac 37340338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 41047851 - 41047813
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  41047851 ctcggcagttaactaccgaagttttcctcggcagttaac 41047813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 42682068 - 42682030
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  42682068 ctcggcagttaattaccgaggttttcctcggcagttaac 42682030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 47776406 - 47776368
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  47776406 ctcggcagttaattaccgaggttttcctcggcagttaac 47776368  T

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Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 14102347 - 14102384
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  14102347 ctcggcagttaactgccgaagttttcctcggcagttaa 14102384  T

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Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 5541585 - 5541549
Alignment:
Q  202 cggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||| |||||| |||||||||||||||||    
T  5541585 cggcagttaactcccgaggatttcctcggcagttaac 5541549  T

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Target: scaffold0012 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 232722 - 232636
Alignment:
Q  82 agtgttgattatatttcctcataaaattacaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    |||||||||||| |||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  232722 agtgttgattatgtttcatcttaaaatcacaatgaattaaatagtattagaatcaataaatattaataatgacaatataaggttttt 232636  T

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Target: scaffold0012; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 232741 - 232868
Alignment:
Q  114 tgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt----atnnnnnnnntaatttaaagtttgaagttttctcggcagtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    |          || |||| ||||||||||| ||||||||||    
T  232741 tgaattaaatagtattagaatcaataaatattaataatgacaatataaggtttttgtaaaaaaaaataaaaaattaaggtttgaagtttcctcggcagtt 232840  T
Q  210 aacttccgaggttttcctcggcagttaa 237  Q
    |||| |||||||||||||||||||||||    
T  232841 aactaccgaggttttcctcggcagttaa 232868  T

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Target: scaffold1500 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1500
Description:

Target: scaffold1500; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 662 - 720
Alignment:
Q  110 acaatgaattaaatagtattagaatcaataaatattaataatgacaatataagattttt 168  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  662 acaatgaattaaatagtattagaatcaataaatattagtaatgacaatataaggttttt 720  T

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Target: scaffold0340 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 1180 - 1217
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1180 ctcggcagttaacttccgaggttttcctcggcagttaa 1217  T

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Target: scaffold0744 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 422 - 460
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  422 ctcggcagttaactaccgaggttttcctcggcagttaac 460  T

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Target: scaffold0494 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 905 - 867
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  905 ctcggcagttaactaccgaggttttcctcggcagttaac 867  T

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Target: scaffold0494; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 931 - 893
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  931 ctcggcagttaactaccgaggttttcctcggcagttaac 893  T

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Target: scaffold0494; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 5405 - 5367
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  5405 ctcggcagttaactaccgaggttttcctcggcagttaac 5367  T

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Target: scaffold0180 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 15617 - 15659
Alignment:
Q  196 ttttctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  15617 ttttctcggcagttaactaccaaggttttcctcggcagttaac 15659  T

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Target: scaffold0101 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 41021 - 41059
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  41021 ctcggcagttaactcccgaggttttcctcggcagttaac 41059  T

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Target: scaffold0101; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 36533 - 36570
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    |||||||||||||| |||||||||||||||||||||||    
T  36533 ctcggcagttaactaccgaggttttcctcggcagttaa 36570  T

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Target: scaffold0038 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 50121 - 50083
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  50121 ctcggcagttaactaccgaggttttcctcggcagttaac 50083  T

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Target: scaffold0794 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 5345 - 5307
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  5345 ctcggcagttaactaccgaggttttcctcggtagttaac 5307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 12465 - 12419
Alignment:
Q  192 gaagttttc-tcggcagttaacttccgaggttttcctcggcagttaa 237  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||    
T  12465 gaagttttcctcgggagttaactcccgaggttttcctcggcagttaa 12419  T

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Target: scaffold0341 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 17350 - 17388
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  17350 ctcggcagttaactaccgaggatttcctcggcagttaac 17388  T

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Target: scaffold0293 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 721 - 759
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  721 ctcggcagttaactaccgaggttttcctgggcagttaac 759  T

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Target: scaffold0199 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 10726 - 10688
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  10726 ctcggcagttaactaccgaggtttccctcggcagttaac 10688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 12387 - 12425
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  12387 ctcggcagttaactaccgaggttttcatcggcagttaac 12425  T

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Target: scaffold0116 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 15954 - 15992
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  15954 ctcggaagttaactaccgaggttttcctcggcagttaac 15992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 84654 - 84616
Alignment:
Q  200 ctcggcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  84654 ctcggcagttaactaccgaggttttcctcggcacttaac 84616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 235969 - 235935
Alignment:
Q  204 gcagttaacttccgaggttttcctcggcagttaac 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  235969 gcagttaactaccgaggttttcctcggcagttaac 235935  T

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Target: scaffold0360 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 7301 - 7338
Alignment:
Q  198 ttctcggcagttaacttccgaggttttcctcggcagtt 235  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  7301 ttctcggcagttaactaccgaggtttttctcggcagtt 7338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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