View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4001_high_7 (Length: 413)
Name: NF4001_high_7
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 47073022 - 47072637
Alignment:
| Q |
18 |
tcttttccttaacatggctcctgctaagtatgcttttttatctgagagaataacaagtactaaggttaattattacaggtactggatgctgataatggat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47073022 |
tcttttccttaacatggctcctgctaagtatgcttttttatctgagagaataacaagtactaaggttaattattacaggtactggatgctgataatggat |
47072923 |
T |
|
| Q |
118 |
gtcgcttagaaagttctaccggtcgaatagctacacgagatatagtgcagtttgtccccatgagagaaatacaaagtaagtactagttgcttctctagtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47072922 |
gtcgcttagaaagttctaccggtcgaatagctacacgagatatagtgcagtttgtccccatgagagaaatacaaagtaagtactagttgcttctctagtt |
47072823 |
T |
|
| Q |
218 |
aacttgtgtaatagtctttcaattcttataactattgtgtcttttgttttattgacaccaatccatgtaccattaagttagcaggtggacaaatataata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47072822 |
aacttgtgtaatagtctttcaattcttataactattgtgtcttttgttttattgacaccaatccatgtaccattaagttagcaggtggacaaatataata |
47072723 |
T |
|
| Q |
318 |
tttattactcttatatttttgctaacaatttttattcatttaattgaaccccattattgtgtttttgacaggtggacaaatctctg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47072722 |
tttattactcttatatttttgctaacaatttttattcatttaattgaaccccattattgtgtttttgacaggtggacaaatctctg |
47072637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 47054945 - 47054826
Alignment:
| Q |
83 |
ttaattattacaggtactggatgctgataatggatgtcgcttagaaagttctaccggtcgaatagctacacgagatatagtgcagtttgtccccatgaga |
182 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||| ||||||| ||||||||| ||||| ||||| ||||||||||||| || ||||||||||||||| |
|
|
| T |
47054945 |
ttaattatttcaggtactggatactgataatggacctcgcttaaaaagttctattggtcgtgtagctgcacgagatatagtacaatttgtccccatgaga |
47054846 |
T |
|
| Q |
183 |
gaaatacaaagtaagtacta |
202 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
47054845 |
gaagtacaaagtaagtacta |
47054826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 18232095 - 18232372
Alignment:
| Q |
18 |
tcttttccttaacatggctcctgctaagtatgcttttttatctgagagaataacaagtactaaggttaattattacaggtactggatgctgataatggat |
117 |
Q |
| |
|
||||||||||| || | |||| | ||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
18232095 |
tcttttccttagcacgactcccacgaagtatgctttgttatctgagagaataacatgtactaaggtttatcattacaggtactggatgctgataatggtc |
18232194 |
T |
|
| Q |
118 |
gtcgcttagaaagttctaccggtcgaatagctacacgagatatagtgcagtttgtccccatgagagaaatacaaagtaagtactagttgcttctctag-t |
216 |
Q |
| |
|
|||| || |||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||| | |
|
|
| T |
18232195 |
gtcgattgaaaagttctactggtcgtctagctacacgagatatagtgcaatttgtccccatgagagaagtacaaagtaagtactagtcgcttctctagtt |
18232294 |
T |
|
| Q |
217 |
taacttgtgtaatagtctttcaattcttataactattgtgtcttttgttttattgacaccaatccatgtaccattaagtt |
296 |
Q |
| |
|
| |||||| || |||| ||||||||||||||||| ||| ||| |||||||||||||||| ||| |||||||||| ||||| |
|
|
| T |
18232295 |
tgacttgt-tagtagtttttcaattcttataacttttgagtc-tttgttttattgacacaaattcatgtaccatcaagtt |
18232372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 337 - 403
Target Start/End: Original strand, 18232465 - 18232531
Alignment:
| Q |
337 |
tgctaacaatttttattcatttaattgaaccccattattgtgtttttgacaggtggacaaatctctg |
403 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
18232465 |
tgctaacaatctttactcatttaattgaaccccattattgtatttttggcaggtggacaaatctctg |
18232531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University