View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4001_low_12 (Length: 343)
Name: NF4001_low_12
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 8361774 - 8362089
Alignment:
| Q |
19 |
gttgacttcggtgcttagcactctcactagtaaaatattgaccggtgtctaactaggactgtttagattttgacgactgttttgacatcatgcaatcaat |
118 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||| || |||||||| | | |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8361774 |
gttgacttcggtgcttaacactcttactagtaaaatattaactggtgtctagccatgactgtttagattttgacaactgttttgacatcatgcaatcaat |
8361873 |
T |
|
| Q |
119 |
aggagtcaattaagagtttcatattggacatatacatttacaaatcacccacaaggccctctaaatgaccttcaccgtctggataatcaccatcattgtt |
218 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8361874 |
aggagtcaattaagagttcgatactagacatatacatttacaaatcacccacaaggccctctaaatgaccttcaccgtctggataatcaccatcattgtt |
8361973 |
T |
|
| Q |
219 |
atctaaatgagtatcatgatcgtctctcatatgctaagtacgtcataattaggatactcttcgagcaccaccattgcctctcccaagctagataacttgt |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| || |
|
|
| T |
8361974 |
atctaaatgagtatcatgattgtctctcatgtgctaagtacgtcataattaggatattctttgagcaccaccattgcctctctcaagctagataactcgt |
8362073 |
T |
|
| Q |
319 |
ctcgatgatgtccatc |
334 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
8362074 |
atcgataatgtccatc |
8362089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 8680733 - 8680693
Alignment:
| Q |
18 |
agttgacttcggtgcttagcactctcactagtaaaatattg |
58 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
8680733 |
agtttacttcggtgcttgacactctcactagtaaaatattg |
8680693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University