View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_low_13 (Length: 340)
Name: NF4001_low_13
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 27 - 325
Target Start/End: Original strand, 5162623 - 5162921
Alignment:
| Q |
27 |
tactattgaagcatggactgaaggtacatacctttccctaaagtatccaattgaacctacaaaaatggtagcaatagagagacggtatgtgataaaaacc |
126 |
Q |
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| T |
5162623 |
tactattgaagcatggactgaaggtacatacctttccctaaagtatccaattgaacctacaaaaatggtagcaatagagagacggtatgtgataaaaacc |
5162722 |
T |
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| Q |
127 |
aaatggttcattccttcatcaaggactttcttgagaagaatattcacaaccgcaaaagaaatatcaattgctatcattatcataaaaggtttccattctt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5162723 |
aaatggttcattccttcatcaaggactttcttgagaagaatattcacaaccgcaaaagaaatatcaattgctatcattatcataaaaggtttccattctt |
5162822 |
T |
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| Q |
227 |
cacaactcttcatttcaccaatgcaattgtattcaacaacaatgcaaattcaattctacttgatatgttgtaatttagattagaccttactgttgattt |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5162823 |
cacaactcttcatttcaccaatgcaattgtattcaacaacaatgcaaattcaattctacttgatatgttgtaatttagattagaccttactgttgattt |
5162921 |
T |
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