View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_low_17 (Length: 283)
Name: NF4001_low_17
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 6988889 - 6989154
Alignment:
| Q |
1 |
atgaagatttgaagcacataaactcagaatcaaaagaagactgaagagctggagaattgagagatggaatgaattcctccctaattcttttgctctttcg |
100 |
Q |
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| T |
6988889 |
atgaagatttgaagcacataaactcagaatcaaaagaagactgaagagctggagaattgagagatggaatgaattcctccctaattcttttgctctttcg |
6988988 |
T |
|
| Q |
101 |
tctagtaagttttggaacatttttcagtggatgaaaggtatgaaatggcatttgtggtccctttttgattaatttaaagaaacctcgccattgtcttgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6988989 |
tctagtaagttttggaacatttttcagtggatgaaaggtatgaaatggcatttgtggtccctttttgattaatttaaagaaacctcgccattgtcttgta |
6989088 |
T |
|
| Q |
201 |
cctccctcggaatcagaagtgcttgcccttgaacttggtgtatcagattcttgacttctaggtgaa |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6989089 |
cctccctcggaatcagaagtgcttgcccttgaacttggtgtatcagattcttgacttctaggtgaa |
6989154 |
T |
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