View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_low_19 (Length: 278)
Name: NF4001_low_19
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 41118297 - 41118048
Alignment:
| Q |
11 |
cagagagggcgggggatgtgcttacttactatgaatttgatttgttgtagggtctttacaagtcatcagggattttctgcactcaatgtggggctgaagg |
110 |
Q |
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| T |
41118297 |
cagagggggcgggggatgtgcttacttactatgaatttgatttgttgtagggtctttacaagtcatctgggattttctgcactcaatgtggggctgaagg |
41118198 |
T |
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| Q |
111 |
cttccgtaaaattacattttatctggtttgcatcttagagaagttaatatgatgatcaaatcttaactttcttaaaatttatttccaacatcaaattaga |
210 |
Q |
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| T |
41118197 |
cttccgtaaaattacattttatcaggtttgcatcttagagaagttaatatgatgatcaaatcttaactttcttaaaatttatttccaacatcaaatgaga |
41118098 |
T |
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| Q |
211 |
gtttttatactgattttccaggatgcaggtcccattgcccatcaggtgcg |
260 |
Q |
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| T |
41118097 |
gtttttatactgattttccaggatgcaggtcccattgcccatcaggtgcg |
41118048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 41107822 - 41107635
Alignment:
| Q |
18 |
ggcgggggatgtgcttacttactatgaatttgatttgttgtagggtctttacaagtcatcagggattttctgcactcaatgtggggctgaaggcttccgt |
117 |
Q |
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| T |
41107822 |
ggcggggaatgtgtctacttaatataaatttgatttttcgtagggtctttacaagtcatctgggaatttctgtactcaatgtgaggctgaaggcttccgt |
41107723 |
T |
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| Q |
118 |
aaaattacattttatctggtttgcatcttagagaagttaatatgatgatcaaatcttaactttcttaaaatttatttccaacatcaaatta |
208 |
Q |
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| T |
41107722 |
aaaattacattttatcaggtttgcatcttagaggagttaatatgatgatcaga--tttacttccttaaaattaatttcc-acatcaaatta |
41107635 |
T |
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