View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_low_2 (Length: 485)
Name: NF4001_low_2
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 28741970 - 28741683
Alignment:
| Q |
18 |
actgttagggcattattcgtgagtctcatgttgtcggtaatgttcacattcattgtgatgaaactgaatctcacaactgggattattccttctttgaatg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28741970 |
actgttagggcattattcgtgagtctcatgttgtcggtaatgttcacgttcattgtgatgaaactgaatctcacaactgggattattccttctttgaatg |
28741871 |
T |
|
| Q |
118 |
tttcagctgggttgttagggtttttctttgtgaagacatggaccaagttgcttgaaaaagctggttggcttacacaaccttttagcagacaggagaatac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28741870 |
tttcagctgggttgttagggtttttctttgtgaagacatggaccaagttgcttgaaaaagctggttggcttacacaaccttttagcagacaggagaatac |
28741771 |
T |
|
| Q |
218 |
tgttattcagacttgcgttgttgcttctagtggaattgcattcagtggtaattaatctaacctaatttggtttaatctaattaccccc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28741770 |
tgttattcagacttgcgttgttgcttctagtggaattgcattcagtggtaattaatctaacctaatttggtttaatctaattaccccc |
28741683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 28750815 - 28750554
Alignment:
| Q |
18 |
actgttagggcattattcgtgagtctcatgttgtcggtaatgttcacattcattgtgatgaaactgaatctcacaactgggattattccttctttgaatg |
117 |
Q |
| |
|
|||||||||||| |||| | |||||||||||||||||| |||||||| || || |||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
28750815 |
actgttagggcaatatttgcgagtctcatgttgtcggtgatgttcacgtttatcgtgatgaagttgaatctcacaactgggattattccttcgttgaatg |
28750716 |
T |
|
| Q |
118 |
tttcagctgggttgttagggtttttctttgtgaagacatggaccaagttgcttgaaaaagctggttggcttacacaaccttttagcagacaggagaatac |
217 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
28750715 |
tttctgctggattgttagggtttttctttgtgaagacatggaccaagttgcttgagaaagctggttggcttaatcaaccttttaccagacaggagaatac |
28750616 |
T |
|
| Q |
218 |
tgttattcagacttgcgttgttgcttctagtggaattgcattcagtggtaattaatctaacc |
279 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||| ||||| || ||||||| |
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| T |
28750615 |
tgttattcagacttgtgttgttgctgctagtggaattgcattcagcggtaactattctaacc |
28750554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 367 - 466
Target Start/End: Complemental strand, 28741621 - 28741522
Alignment:
| Q |
367 |
gggttatgggtttctggtttttgggatttgttgcattgcattgcatgtgtttttatatggtgggtcccactgggaatagaatagtgatgatcccaatctt |
466 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||| ||||||||| |
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| T |
28741621 |
gggttatgggtttctggtttttgggatttgttgcattgcattgcatatgtttttatatggtgggtcccattgtgaatagaatagagatgaccccaatctt |
28741522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 39940963 - 39941216
Alignment:
| Q |
18 |
actgttagggcattattcgtgagtctcatgttgtcggtaatgttcacattcattgtgatgaaactgaatctcacaactgggattattccttctttgaatg |
117 |
Q |
| |
|
|||||||||||| || |||||||| ||||| | || || |||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
39940963 |
actgttagggcaatagtcgtgagtatcatgctatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatg |
39941062 |
T |
|
| Q |
118 |
tttcagctgggttgttagggtttttctttgtgaagacatggaccaagttgcttgaaaaagctggttggcttacacaaccttttagcagacaggagaatac |
217 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||| |||||||||| ||| ||||||||||| |
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| T |
39941063 |
tttcggctgggttgttagggttcttctttgtcaagacatggaccaagttgcttgagaaagcgggttggcttaatcaaccttttaccaggcaggagaatac |
39941162 |
T |
|
| Q |
218 |
tgttattcagacttgcgttgttgcttctagtggaattgcattcagtggtaatta |
271 |
Q |
| |
|
||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
39941163 |
tgttattcaaacttgtgttgttgctgctagtggaattgcattcagtggtaatta |
39941216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 39956649 - 39956731
Alignment:
| Q |
23 |
tagggcattattcgtgagtctcatgttgtcggtaatgttcacattcattgtgatgaaactgaatctcacaactgggattattc |
105 |
Q |
| |
|
||||||| || |||||||| ||||| | || || |||||||| |||||||||||||| ||||||||||| ||||||||||||| |
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| T |
39956649 |
tagggcaatagtcgtgagtatcatgctatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattc |
39956731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 39941324 - 39941372
Alignment:
| Q |
371 |
tatgggtttctggtttttgggatttgttgcattgcattgcatgtgtttt |
419 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
39941324 |
tatgggtttctggttttttcgatttgttgcattgctttgcatgtgtttt |
39941372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 7963762 - 7963651
Alignment:
| Q |
31 |
tattcgtgagtctcatgttg-tcggtaatgttcacattcattgtgatgaaactgaatctcacaactgggattattccttctttgaatgtttcagctgggt |
129 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||||||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||||| ||||||| |
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|
| T |
7963762 |
tattcgtgagtctcatgttggtcgatgatgttcacattcatcatgatgaatctgaatctcacaactgggattattcattcgttgaatgtttttgctgggt |
7963663 |
T |
|
| Q |
130 |
tgttagggtttt |
141 |
Q |
| |
|
||||||| |||| |
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|
| T |
7963662 |
tgttaggatttt |
7963651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 7961238 - 7961113
Alignment:
| Q |
31 |
tattcgtgagtctcatgttgtcggtaatgttcacattcattgtgatgaaactgaatctcacaactgggattattccttctttgaatgtttcagctgggtt |
130 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||| || |||||||| |||| ||| |
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|
| T |
7961238 |
tattcgtgagtctcgttttgacggtaatgttcacattcatcgtgatgaagctcaatctcacaactggaattattccttcattaaatgtttctgctgcgtt |
7961139 |
T |
|
| Q |
131 |
gttagggtttttctttgtgaagacat |
156 |
Q |
| |
|
|| | ||||| |||||||| |||| |
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|
| T |
7961138 |
atttgcttttttttttgtgaaaacat |
7961113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 268
Target Start/End: Complemental strand, 29250334 - 29250132
Alignment:
| Q |
66 |
ttcattgtgatgaaactgaatctcacaactgggattattccttctttgaatgtttcagctgggttgttagggtttttctttgtgaagacatggaccaagt |
165 |
Q |
| |
|
|||||||| |||||||| ||||| || ||||| ||||| ||||| | ||||| || ||||| | || || ||||||||||| || || ||||| |||| |
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|
| T |
29250334 |
ttcattgttatgaaacttaatcttactactggaattataccttcacttaatgtctctgctggtcttttgggatttttctttgtcaaaacttggactaagt |
29250235 |
T |
|
| Q |
166 |
tgcttgaaaaagctggttggcttacacaaccttttagcagacaggagaatactgttattcagacttgcgttgttgcttctagtggaattgcattcagtgg |
265 |
Q |
| |
|
| | |||||| ||| | | | | ||||||||||| ||||| || |||||||||||||||||||| |||||||||||| |||||||| || ||||| |
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|
| T |
29250234 |
ttttggaaaaatctgatatgttgaaacaaccttttactagacaagaaaatactgttattcagacttgtgttgttgcttcttccggaattgcttttagtgg |
29250135 |
T |
|
| Q |
266 |
taa |
268 |
Q |
| |
|
||| |
|
|
| T |
29250134 |
taa |
29250132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 9530958 - 9530910
Alignment:
| Q |
195 |
ccttttagcagacaggagaatactgttattcagacttgcgttgttgctt |
243 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
9530958 |
ccttttactagacaggagaatactgttattcagacttgtgttgttgctt |
9530910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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