View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_low_22 (Length: 259)
Name: NF4001_low_22
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 34320310 - 34320543
Alignment:
| Q |
11 |
cacagataaaatattgaaccctttgtttcccgacgaattgcaatggaaagacatggattggagcgatactttgatagctgttcaaatcaactgtttcgca |
110 |
Q |
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| T |
34320310 |
cacagataaaatattgaaccctttgtttcccgacaaattgcaatggaaagacatggattggagcgatactttgatagctgttcaaatcaactgtttcgca |
34320409 |
T |
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| Q |
111 |
tgtggaggaatggcgataagtatttgcatgagtcacaaaattggtgatgcgtcaaccattttcaacttcatgaatgattggtccatcatcaaccaaaaat |
210 |
Q |
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| T |
34320410 |
tgtggaggaatggcgataagtatttgcatgagtcacaaaattggtgatgcgtcaaccattttcaacttcatgaatgattggtccatcatcaaccaaaaat |
34320509 |
T |
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| Q |
211 |
tacaagaagaagaagaagataaagggttattagt |
244 |
Q |
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| T |
34320510 |
tacaagaagaagaagaagataaagggttattagt |
34320543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 34329231 - 34329453
Alignment:
| Q |
24 |
ttgaaccctttgtttcccgacgaattgcaatggaaagacatggattggagcgatactttgatagctgttcaaatcaactgtttcgcatgtggaggaatgg |
123 |
Q |
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| T |
34329231 |
ttgaaccctttgttcccggatgaattgcaatggaaagaaatggattggagtgaaactttaatagccattcaaatcaactgttttgcatgtggaggaatgg |
34329330 |
T |
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| Q |
124 |
cgataagtatttgcatgagtcacaaaattggtgatgcgtcaaccattttcaacttcatgaatgattggtccatcatcaaccaaaaattac---aagaaga |
220 |
Q |
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| T |
34329331 |
cgataagtgtttgcatgagtcacaaaattggtgatggttcgacacttttcaacttcatgaatgattggtccattatcaacgaaaatttaccaaaagaaaa |
34329430 |
T |
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| Q |
221 |
agaagaagataaagggttattag |
243 |
Q |
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| T |
34329431 |
agaaggagaaaaagggttattag |
34329453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 36633294 - 36633111
Alignment:
| Q |
24 |
ttgaaccctttgtttcccgacgaattgcaatggaaagacatggattggagcgatactttgatagctgttcaaatcaactgtttcgcatgtggaggaatgg |
123 |
Q |
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| T |
36633294 |
ttgaaccctttgttccctgatgaattacaatggaaagacatggattggagtgcaagttttatagccattcaaataaactgctttgcatgtggaggaatgg |
36633195 |
T |
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| Q |
124 |
cgataagtatttgcatgagtcacaaaattggtgatgcgtcaaccattttcaacttcatgaatgattggtccatcatcaaccaaa |
207 |
Q |
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| T |
36633194 |
ctataagtatttgcatgagtcacaaaattggtgatgcttcaaccgttttcaacttcatgaatgattgggccactatcaaccaaa |
36633111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 36627727 - 36627543
Alignment:
| Q |
24 |
ttgaaccctttgtttcccgacgaattgcaatggaaagacatggattggagcgatactttgatagctgttcaaatcaactgtttcgcatgtggaggaatgg |
123 |
Q |
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| T |
36627727 |
ttgaaccctttgttccctgatgaattacaatggaaagaaatggattggagagcaagttttatagccattcaaataaattggtttacatgtggaggaatgg |
36627628 |
T |
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| Q |
124 |
cgataagtatttgcatgagtcacaaaattggtgatgcgtcaaccattttcaacttcatgaatgattggtccatcatcaaccaaaa |
208 |
Q |
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| T |
36627627 |
taataagtatttgcatgactcacaaaattggtgatgcttcaaccattttcaaattcatgaatgattgggccattatcaaccaaaa |
36627543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 208
Target Start/End: Complemental strand, 36622487 - 36622306
Alignment:
| Q |
27 |
aaccctttgtttcccgacgaattgcaatggaaagacatggattggagcgatactttgatagctgttcaaatcaactgtttcgcatgtggaggaatggcga |
126 |
Q |
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| T |
36622487 |
aaccctttgttccctgatgaattacaatggaaagaaatggattggagagcgagttttatagccattcaagtaaattggtttgcatgcggaggaatggtaa |
36622388 |
T |
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| Q |
127 |
taagtatttgcatgagtcacaaaattggtgatgcgtcaaccattttcaacttcatgaatgattggtccatcatcaaccaaaa |
208 |
Q |
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| T |
36622387 |
taagtatttgcattagtcacaaaattggtgatgctgcaaccattttcaacttcatgaatgattgggccattatctaccaaaa |
36622306 |
T |
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