View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_low_26 (Length: 247)
Name: NF4001_low_26
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 7425629 - 7425860
Alignment:
| Q |
1 |
aaggaataaaatccccaatattgaagaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactctt |
100 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425629 |
aaggaataaaatccccaacattgaggaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactctt |
7425728 |
T |
|
| Q |
101 |
ctccaaatactttttccccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgagttaaat |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7425729 |
ctccaaatactttttgcccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgaattaaat |
7425828 |
T |
|
| Q |
201 |
agttcgtgcaagaaagcatgtaactcttgttt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7425829 |
agttcgtgcaagaaagcatgtaactcttgttt |
7425860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 7431618 - 7431810
Alignment:
| Q |
1 |
aaggaataaaatccccaatattgaagaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
7431618 |
aaggaataaaatccccaatattgaagaccccattaagcaaaaacaactcatccaacatctccttaaactcttcaggggaaataataacattttcactctt |
7431717 |
T |
|
| Q |
101 |
ctccaaatactttttccccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttga |
193 |
Q |
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| T |
7431718 |
ctccaagtatttcttccccaacaccatgcggcttataatattaagactaaaagttgaaagatggtccttcaacaaaatagttttattttttga |
7431810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 7416643 - 7416874
Alignment:
| Q |
1 |
aaggaataaaatccccaatattgaagaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| ||||| ||| |||| |
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| T |
7416643 |
aaggaataaaatccccaatattgagaattccattaagtaaaaacaactcatccaacatcttcttaaactcatcaggggaaataactgcattatcagtctt |
7416742 |
T |
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| Q |
101 |
ctccaaatactttttccccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgagttaaat |
200 |
Q |
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||||| ||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| || || |
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| T |
7416743 |
ttccaagtactttttccctagcaccattcgacttataacatttagactcaaagttgaaagatggtctttcaccaaaattgttttgttttttgaattgaaa |
7416842 |
T |
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| Q |
201 |
agttcgtgcaagaaagcatgtaactcttgttt |
232 |
Q |
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|||| ||||| ||| |||| | ||||||||| |
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| T |
7416843 |
agtttatgcaaaaaatcatgcatctcttgttt |
7416874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 7430039 - 7429973
Alignment:
| Q |
123 |
accatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgtttt |
189 |
Q |
| |
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||||||||||| |||| ||||| ||| |||||||||||||||||||| ||| |||| ||||| |||| |
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| T |
7430039 |
accatgcgactaataatattgaaactaaaagttgaaagatggtcctttaacgaaatagttttatttt |
7429973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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