View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_low_28 (Length: 241)
Name: NF4001_low_28
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3290094 - 3289874
Alignment:
| Q |
1 |
caagaaacaattgcatttggtcaagttatgagagaattggcaatgatcctattgtatgtgccaatgagttcatggcaagaataaagatatcaagcttnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3290094 |
caagaaacaattgcatttggtcaagttatgagagaattggcaatgatcctattgtatgtgccaatgagttcatggcaagaataaagatatcaagcttaaa |
3289995 |
T |
|
| Q |
101 |
nnnnttgtggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccggtgtttctatatgatccttgctcttacttacaaaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3289994 |
aaaattgtggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccggtgtttctatatgatccttgctcttacttacaaaatttt |
3289895 |
T |
|
| Q |
201 |
gatgatggttgttattccatt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
3289894 |
gatgatggttgttattccatt |
3289874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 3296039 - 3295824
Alignment:
| Q |
1 |
caagaaacaattgcatttggtcaagttatgagagaattggcaatgatcctattgtatgtgccaatgagttcatggcaagaataaagatatcaagcttnnn |
100 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || ||||| ||||| |||||||||||||| |
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| T |
3296039 |
caagaaacaactgcatttggtcaacttatgagagaattggcaatgatcctattgtatgtgtcaatgaatttatggctagaatgaagatatcaagcttgaa |
3295940 |
T |
|
| Q |
101 |
nnnnttgtggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccggtgtttctatatgatccttgctcttacttacaaaatttt |
200 |
Q |
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|||||||||||||| ||||||| |||||| |||||||| |||| | |||||| || ||||||| ||||||| || |||| || |||||||||||| |
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| T |
3295939 |
aaatttgtggaagaagatcaagaaagaaaagaaaaggagaatatttacatcatcttctcccgtgtttcaatatgattctagctcatatttacaaaatttt |
3295840 |
T |
|
| Q |
201 |
gatgatggttgttatt |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
3295839 |
gatgatggttgttatt |
3295824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 3257036 - 3256827
Alignment:
| Q |
1 |
caagaaacaattgcatttggtcaagttatgagagaattggcaatgatcctattgtatgtgccaatgagttcatggcaagaataaagatatcaagcttnnn |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| | ||||||||||| |||||| ||||||| |
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| T |
3257036 |
caagaaacaactgcatttggtcaagttatgagagaattggcaacgatcctattgaatgtgtcaatgaacttatggcaagaatgaagatagcaagcttaaa |
3256937 |
T |
|
| Q |
101 |
nnnnttgtggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccggtgtttctatatgatccttgctcttacttacaaaatttt |
200 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||||||| |||||| | || || || ||| |||||||| || |||||||||||||||||| |
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| T |
3256936 |
aaaattgtggaagaagattaagaaagaaaagaagaggagaatatttagatcgccctcaccagtatttatatatgattctaattcttacttacaaaatttt |
3256837 |
T |
|
| Q |
201 |
gatgatggtt |
210 |
Q |
| |
|
|||||||||| |
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|
| T |
3256836 |
gatgatggtt |
3256827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3280170 - 3279962
Alignment:
| Q |
1 |
caagaaacaattgcatttggtcaagttatgagagaattggcaatgatcctattgtatgtgccaatgagttcatggcaagaataaagatatcaagcttnnn |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| || |||||| ||| ||||| |||||| ||||||||||||| |||||| ||||||| |
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| T |
3280170 |
caagaaacaactgcatttggtcaagttatgagagaattggaaacgatcctgttgaatgtgtcaatgaactcatggcaagaatgaagatagcaagcttaaa |
3280071 |
T |
|
| Q |
101 |
nnnnttgtggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccggtgtttctatatgatccttgctcttacttacaaaatttt |
200 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||| ||| |||| | |||| || || |||||||||||| || |||||||||||||||||| |
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| T |
3280070 |
aaaattgtggaagaagattatgaaagaaaagaagaggaaaatatttaaatcgccttcaccagtatttctatatgattctaattcttacttacaaaatttt |
3279971 |
T |
|
| Q |
201 |
gatgatggt |
209 |
Q |
| |
|
||||||||| |
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|
| T |
3279970 |
gatgatggt |
3279962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 3250817 - 3250620
Alignment:
| Q |
13 |
gcatttggtcaagttatgagagaattggcaatgatcctattgtatgtgccaatgagttcatggcaagaataaagatatcaagcttnnnnnnnttgtggaa |
112 |
Q |
| |
|
|||||| |||||||||||||||| ||||| |||| ||||||||||||| |||||| |||||| ||||| |||||| ||||||| ||||||| |
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| T |
3250817 |
gcattttgtcaagttatgagagacttggctatgaccctattgtatgtgtcaatgaattcatgagcagaatgaagatagcaagcttgaaaactttgtggag |
3250718 |
T |
|
| Q |
113 |
gaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccggtgtttctatatgatccttgctcttacttacaaaattttgatgatggtt |
210 |
Q |
| |
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|||||| |||| || || |||||||||||||||||| |||||| || |||||| ||||||||||| |||||||||||| ||||| |||||||||| |
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| T |
3250717 |
gaagatcaagagagagaaaaagaggagaatttttagatcatcttcacctgtgtttatatatgatcctaactcttacttacagaatttcgatgatggtt |
3250620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 3288026 - 3287825
Alignment:
| Q |
1 |
caagaaacaattgcatttggtcaagttatgagagaattggcaatgatcctattgtatgtgccaatgagttcatggcaagaataaagatatcaagcttnnn |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| || ||| |||||| || ||||||||| |||| ||||| ||||| ||||||| |
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| T |
3288026 |
caagaaacaactgcatttggtcaagttatgagagaattggcaacgaccctgttgtatttgtcaatgagtttatggtcagaatgaagatcgcaagcttaga |
3287927 |
T |
|
| Q |
101 |
nnnnttgtggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccggtgtttctatatgatcct--tgctcttacttacaaaatt |
198 |
Q |
| |
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|| ||||||||||| ||||||| ||| ||||||| |||||||||| |||| | |||||||||||||||||| | |||||||||||||||| |
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| T |
3287926 |
aaaattatggaagaagatcaagaaagaaaaaaagaggataatttttagatccccttcacttgtgtttctatatgatcctagtattcttacttacaaaatt |
3287827 |
T |
|
| Q |
199 |
tt |
200 |
Q |
| |
|
|| |
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|
| T |
3287826 |
tt |
3287825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 3271297 - 3271215
Alignment:
| Q |
128 |
aaagaagaggagaatttttagaagatcttcgccggtgtttctatatgatccttgctcttacttacaaaattttgatgatggtt |
210 |
Q |
| |
|
|||||||| ||||||||||||| |||||| || |||||||||||||||| ||||||||| |||||||| ||||||||||||| |
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|
| T |
3271297 |
aaagaagatgagaatttttagatcatcttcacctgtgtttctatatgatcattgctcttatttacaaaactttgatgatggtt |
3271215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 3284834 - 3284729
Alignment:
| Q |
105 |
ttgtggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccggtgtttctatatgatccttgctcttacttacaaaattttgatg |
204 |
Q |
| |
|
|||||||||||||| || | | |||||||||||||||||||||| |||||| || || ||| ||||||||| ||| |||||||||||||| ||||||| |
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| T |
3284834 |
ttgtggaagaagatcaatagacaaaagaagaggagaatttttagatcatcttcacccgtatttttatatgatcgttgttcttacttacaaaactttgatg |
3284735 |
T |
|
| Q |
205 |
atggtt |
210 |
Q |
| |
|
|||||| |
|
|
| T |
3284734 |
atggtt |
3284729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 3284921 - 3284872
Alignment:
| Q |
18 |
tggtcaagttatgagagaattggcaatgatcctattgtatgtgccaatga |
67 |
Q |
| |
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|||||||| ||||||| ||||||| |||| ||||||||||||| |||||| |
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|
| T |
3284921 |
tggtcaaggtatgagaaaattggccatgagcctattgtatgtgtcaatga |
3284872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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