View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4001_low_3 (Length: 476)

Name: NF4001_low_3
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4001_low_3
NF4001_low_3
[»] chr5 (15 HSPs)
chr5 (202-321)||(14628345-14628464)
chr5 (334-469)||(14628166-14628300)
chr5 (3-100)||(17965806-17965903)
chr5 (4-100)||(17966906-17967002)
chr5 (1-80)||(33995165-33995244)
chr5 (1-64)||(39743165-39743228)
chr5 (1-63)||(34682251-34682313)
chr5 (1-80)||(8702215-8702294)
chr5 (1-56)||(18307255-18307310)
chr5 (3-80)||(18538354-18538431)
chr5 (3-40)||(42539392-42539429)
chr5 (1-44)||(38968108-38968151)
chr5 (1-80)||(41201705-41201784)
chr5 (117-145)||(14628522-14628550)
chr5 (1-29)||(39742603-39742631)
[»] scaffold0012 (2 HSPs)
scaffold0012 (5-93)||(232512-232600)
scaffold0012 (1-44)||(232849-232892)
[»] chr1 (15 HSPs)
chr1 (1-63)||(11183180-11183242)
chr1 (1-100)||(51289977-51290076)
chr1 (1-100)||(23276125-23276224)
chr1 (1-56)||(44336250-44336305)
chr1 (1-100)||(48751427-48751526)
chr1 (1-63)||(19499129-19499191)
chr1 (5-57)||(40057675-40057727)
chr1 (5-80)||(5077918-5077993)
chr1 (1-80)||(46973181-46973260)
chr1 (5-80)||(6562182-6562257)
chr1 (1-44)||(41804050-41804093)
chr1 (3-56)||(30910022-30910075)
chr1 (4-44)||(6557928-6557968)
chr1 (4-100)||(27485016-27485112)
chr1 (8-80)||(30905748-30905820)
[»] chr4 (18 HSPs)
chr4 (1-100)||(8109348-8109447)
chr4 (1-80)||(9889971-9890050)
chr4 (3-70)||(50278817-50278884)
chr4 (7-44)||(39588105-39588142)
chr4 (1-58)||(49572917-49572974)
chr4 (4-44)||(55407813-55407853)
chr4 (1-56)||(955793-955848)
chr4 (1-56)||(15995723-15995778)
chr4 (1-56)||(19069188-19069243)
chr4 (1-80)||(29700319-29700398)
chr4 (1-40)||(56138269-56138308)
chr4 (1-55)||(33383807-33383861)
chr4 (1-55)||(34151616-34151670)
chr4 (3-41)||(48256587-48256625)
chr4 (3-80)||(37959739-37959816)
chr4 (4-44)||(1041948-1041988)
chr4 (1-93)||(11494508-11494599)
chr4 (4-44)||(21472504-21472544)
[»] chr7 (17 HSPs)
chr7 (1-80)||(42499386-42499465)
chr7 (1-100)||(47776289-47776388)
chr7 (1-80)||(10705225-10705304)
chr7 (5-100)||(27453615-27453710)
chr7 (5-80)||(29593349-29593424)
chr7 (1-96)||(30355256-30355351)
chr7 (1-56)||(34742412-34742467)
chr7 (1-64)||(36392118-36392181)
chr7 (3-44)||(5537885-5537926)
chr7 (5-93)||(39460517-39460605)
chr7 (1-45)||(40587673-40587717)
chr7 (1-44)||(9494823-9494866)
chr7 (5-64)||(34622492-34622551)
chr7 (1-34)||(17840907-17840940)
chr7 (3-64)||(29592536-29592597)
chr7 (8-44)||(11629744-11629780)
chr7 (4-44)||(45361662-45361702)
[»] chr2 (12 HSPs)
chr2 (1-80)||(27276391-27276470)
chr2 (1-58)||(29397909-29397966)
chr2 (3-80)||(45137452-45137529)
chr2 (3-55)||(30271076-30271128)
chr2 (1-44)||(25964824-25964867)
chr2 (1-67)||(3795327-3795393)
chr2 (4-53)||(16583589-16583638)
chr2 (1-94)||(24512130-24512223)
chr2 (31-100)||(23786081-23786150)
chr2 (3-56)||(36255732-36255785)
chr2 (1-101)||(8268766-8268866)
chr2 (1-41)||(30273167-30273207)
[»] scaffold0618 (1 HSPs)
scaffold0618 (1-70)||(3872-3941)
[»] chr3 (18 HSPs)
chr3 (1-94)||(34691588-34691681)
chr3 (8-80)||(45101872-45101944)
chr3 (1-56)||(42756160-42756215)
chr3 (1-56)||(46344938-46344993)
chr3 (5-87)||(7843038-7843120)
chr3 (1-63)||(29929420-29929482)
chr3 (1-63)||(29978574-29978636)
chr3 (4-44)||(48888753-48888793)
chr3 (1-44)||(30256020-30256063)
chr3 (1-80)||(41579741-41579820)
chr3 (1-44)||(49219808-49219851)
chr3 (3-54)||(49268864-49268915)
chr3 (1-67)||(2743388-2743454)
chr3 (8-82)||(2745229-2745303)
chr3 (2-100)||(49196467-49196565)
chr3 (1-45)||(4002522-4002566)
chr3 (1-41)||(20918028-20918068)
chr3 (1-41)||(20926990-20927030)
[»] chr8 (10 HSPs)
chr8 (4-56)||(41276880-41276932)
chr8 (5-100)||(43188030-43188126)
chr8 (1-55)||(26451482-26451536)
chr8 (1-39)||(40077267-40077305)
chr8 (1-94)||(41855331-41855424)
chr8 (1-56)||(18438635-18438690)
chr8 (1-56)||(34823033-34823088)
chr8 (1-87)||(35962277-35962363)
chr8 (3-44)||(28646266-28646307)
chr8 (3-44)||(28650850-28650891)
[»] scaffold1379 (1 HSPs)
scaffold1379 (1-100)||(451-550)
[»] scaffold0494 (1 HSPs)
scaffold0494 (1-80)||(808-887)
[»] scaffold0341 (1 HSPs)
scaffold0341 (5-80)||(17372-17447)
[»] chr6 (5 HSPs)
chr6 (1-56)||(18001215-18001269)
chr6 (1-44)||(31768766-31768809)
chr6 (3-94)||(35021282-35021373)
chr6 (1-43)||(32643538-32643580)
chr6 (3-44)||(8193228-8193269)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 202 - 321
Target Start/End: Complemental strand, 14628464 - 14628345
Alignment:
Q  202 gaataattaaaacctaagtccatgttataccaaaaataaacatttctaacaaaagaatatctttggatgggctgtacgagaagaatcttaagtccattag 301  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14628464 gaataaataaatcctaagtccatgttataccaaaaataaacatttctaacaaaagaatatctttggatgggctgtacgagaagaatcttaagtccattag 14628365  T
Q  302 ttagaaaattgtttctcacg 321  Q
    ||||||||||||||||||||    
T  14628364 ttagaaaattgtttctcacg 14628345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 334 - 469
Target Start/End: Complemental strand, 14628300 - 14628166
Alignment:
Q  334 catttcttttcaatactgtataacaacttttacataaactgctaccaattaatataaatattgtataacaaccgacttctattgagtaatctctggagaa 433  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14628300 catttcttttcaatactgtatatcaacttttacataaactggtaccaattaatataaatattgtataacaa-cgacttctattgagtaatctctggagaa 14628202  T
Q  434 ttgctttcaataagagatagagcacagatttacaaa 469  Q
    |||||||| || |||||||||||||| |||||||||    
T  14628201 ttgctttcgatcagagatagagcacatatttacaaa 14628166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 17965903 - 17965806
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcagtcttat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||| |||||||| || || ||||||| |||||    
T  17965903 gttttcctcggcagttaactgcagtcgaatttttaattcctcgacaattaactgccgaggggataaaatcgtattttactagtgattctcagccttat 17965806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 17966906 - 17967002
Alignment:
Q  4 ttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcagtcttat 100  Q
    |||||||||| ||||||||||||||| |||||||||| |||  || ||||||| | ||||| |||||| |||||||| || |||||||||| |||||    
T  17966906 ttttcctcggtagttaactgcagtcggatttttaatttctcggcagttaactgccgagggggtaaaatcgtattttactagtgtttctcagccttat 17967002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 33995165 - 33995244
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    |||||||||||||||||||| ||||  ||| |||| |||| |||  || ||||||||| |||||||||||||||||||||    
T  33995165 aggttttcctcggcagttaattgcatccgatttttgaatttctcggcagttaactgtcgaggggataaaattgtatttta 33995244  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 39743165 - 39743228
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaagggg 64  Q
    ||||||||||||||||||||||||||||||||||  ||||||||  || ||||||||| |||||    
T  39743165 aggttttcctcggcagttaactgcagtcgaatttcaaattcctcggcagttaactgtcgagggg 39743228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34682313 - 34682251
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggg 63  Q
    |||||||||||||||||||||||||| ||  |||| |||||||| ||| ||||||||||||||    
T  34682313 aggttttcctcggcagttaactgcagccggtttttgaattcctcgacagttaactgtcaaggg 34682251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8702215 - 8702294
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||  || ||||||||| ||||   ||||| ||||||||    
T  8702215 aggttttcctcagcagttaactgcagtcagatttttaattcctcggcagttaactgtcgagggagcaaaatcgtatttta 8702294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18307310 - 18307255
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactg 56  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||| ||| |||||||    
T  18307310 aggttttcctcggcagttaactacagccgattttttaattcctcgacagttaactg 18307255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 18538354 - 18538431
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    |||||||||||||||||||||||| ||  |||| |||||||| ||| ||||||| | |||||  ||||| ||||||||    
T  18538354 gttttcctcggcagttaactgcagccggtttttgaattcctcgacaattaactgccgagggggcaaaatcgtatttta 18538431  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 42539392 - 42539429
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaatt 40  Q
    |||||||||||||||||||||||| |||||||||||||    
T  42539392 gttttcctcggcagttaactgcagccgaatttttaatt 42539429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 38968151 - 38968108
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    |||||||||||||||||||||||||| || |||||| |||||||    
T  38968151 aggttttcctcggcagttaactgcagccggattttttattcctc 38968108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 41201784 - 41201705
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    |||||||||||||||||||||||||| ||  | || |||||||| ||| |||| |||| || ||| ||||| ||||||||    
T  41201784 aggttttcctcggcagttaactgcagccggttattgaattcctcgacaattaattgtcgagaggacaaaatcgtatttta 41201705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 14628550 - 14628522
Alignment:
Q  117 attcaattatggtagtggacggtcataaa 145  Q
    |||||||||||||||||||||||||||||    
T  14628550 attcaattatggtagtggacggtcataaa 14628522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39742631 - 39742603
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcg 29  Q
    |||||||||||||||||||||||||||||    
T  39742631 aggttttcctcggcagttaactgcagtcg 39742603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 232600 - 232512
Alignment:
Q  5 tttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctca 93  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||||| |||||||| || | |||||||    
T  232600 tttcctcggcagttaactgcagtcggatttttaattcctcgacagttaactgccgaggggataaaatcgtattttactagtctttctca 232512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 232849 - 232892
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    |||||||||||||||||||| ||||| |||||||||||||||||    
T  232849 aggttttcctcggcagttaattgcagccgaatttttaattcctc 232892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11183242 - 11183180
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggg 63  Q
    |||||||||||||||||||||||||| || ||||||||||||||| || ||||||||||||||    
T  11183242 aggttttcctcggcagttaactgcagccggatttttaattcctcagcagttaactgtcaaggg 11183180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 51289977 - 51290076
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcagtcttat 100  Q
    |||||||||||||||||||||||||  || |||||||||||||||  | ||||||| | ||||| ||||||  ||||||| || |||||||||| |||||    
T  51289977 aggttttcctcggcagttaactgcaaccggatttttaattcctcagtagttaactgccgagggggtaaaatcttattttactagtgtttctcagccttat 51290076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 23276125 - 23276224
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcagtcttat 100  Q
    ||||||||||||||||||||||| || || ||||||||||||||| || ||||||| | |||||  ||||  |||||||| |  |||||||||| |||||    
T  23276125 aggttttcctcggcagttaactgtagccggatttttaattcctcagcagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccttat 23276224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 44336305 - 44336250
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactg 56  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||||    
T  44336305 aggttttcctcggcagttaactgcagccgaatttctaattcctcgacagttaactg 44336250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 48751427 - 48751526
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcagtcttat 100  Q
    ||||||||||||||| |||||||||| || ||||||||||||||  || || | || | ||||| |||||| |||||||| || |||||||||| |||||    
T  48751427 aggttttcctcggcaattaactgcagccggatttttaattcctcggcagttcagtgccgagggggtaaaatcgtattttactagtgtttctcagccttat 48751526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 19499129 - 19499191
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggg 63  Q
    |||||||||||||||||||||||||| |||||||| |||| |||| || ||||||||| ||||    
T  19499129 aggttttcctcggcagttaactgcagccgaattttaaatttctcagcagttaactgtcgaggg 19499191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 40057675 - 40057727
Alignment:
Q  5 tttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgt 57  Q
    |||||||||||||||||| ||||||| |||| |||||||||||| ||||||||    
T  40057675 tttcctcggcagttaactacagtcgatttttaaattcctcaacaattaactgt 40057727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 5077993 - 5077918
Alignment:
Q  5 tttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    ||||||||||||||||||||||||| ||||  |||| |||| || ||||||| | ||||| |||||| ||||||||    
T  5077993 tttcctcggcagttaactgcagtcggatttcaaatttctcagcagttaactgccgagggggtaaaatcgtatttta 5077918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 46973260 - 46973181
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    |||||||||||||||||||||||||| ||  |||| ||||||||  || ||||||| |||||||  ||||| ||||||||    
T  46973260 aggttttcctcggcagttaactgcagccggtttttgaattcctcggcagttaactgccaagggggcaaaatcgtatttta 46973181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 6562182 - 6562257
Alignment:
Q  5 tttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    |||||||||||||||||||||| || ||||  ||||||||  || ||||||| | ||||| |||||| ||||||||    
T  6562182 tttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggggtaaaatcgtatttta 6562257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 41804050 - 41804093
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    |||||||||||||||||||||||||||||  |||| ||||||||    
T  41804050 aggttttcctcggcagttaactgcagtcggtttttgaattcctc 41804093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 30910022 - 30910075
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactg 56  Q
    |||||||||||||||||||||||| || ||||  |||||||| ||| |||||||    
T  30910022 gttttcctcggcagttaactgcagccggatttcaaattcctcgacagttaactg 30910075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 6557968 - 6557928
Alignment:
Q  4 ttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  6557968 ttttcctcggcagttaactgcagccgaatttcaaattcctc 6557928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 27485112 - 27485016
Alignment:
Q  4 ttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcagtcttat 100  Q
    |||| |||||||||||||||||| || |||||||||||||   || ||||||| | |||||  ||||  |||||||| |  |||||||||| |||||    
T  27485112 tttttctcggcagttaactgcagccggatttttaattcctaggcagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccttat 27485016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 30905820 - 30905748
Alignment:
Q  8 cctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    ||||||||||||||||||| || ||||  |||| |||  || ||||||| | |||||||||||| ||||||||    
T  30905820 cctcggcagttaactgcagccggatttcaaatttctcggcagttaactgccgaggggataaaatcgtatttta 30905748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 8109447 - 8109348
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcagtcttat 100  Q
    ||||||||||||||||||||||| || || || ||||||||||| ||| ||||||  ||||||| |||||| |||||||| |  |||||||||| |||||    
T  8109447 aggttttcctcggcagttaactgtagccggatatttaattcctcgacagttaactaccaagggggtaaaatcgtattttactcgtgtttctcagccttat 8109348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9890050 - 9889971
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    |||||||||||||||||||||||||| || ||||  ||||||||  || ||||||| | ||||| |||||| ||||||||    
T  9890050 aggttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggggtaaaatcgtatttta 9889971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 50278817 - 50278884
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaa 70  Q
    |||||||||||||||||||||||| || |||| |||||| || ||| ||||||||| |||||| ||||    
T  50278817 gttttcctcggcagttaactgcagccggatttctaattcatcgacagttaactgtcgaggggacaaaa 50278884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 39588142 - 39588105
Alignment:
Q  7 tcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    |||||||||||||||||||||||||||| |||||||||    
T  39588142 tcctcggcagttaactgcagtcgaatttctaattcctc 39588105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 49572917 - 49572974
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtc 58  Q
    |||||||||||||||||||||||||| ||| | || |||||||| ||| |||||||||    
T  49572917 aggttttcctcggcagttaactgcagccgattattgaattcctcgacagttaactgtc 49572974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 55407813 - 55407853
Alignment:
Q  4 ttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  55407813 ttttcctcggcagttaactgcagccggatttttaattcctc 55407853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 955848 - 955793
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactg 56  Q
    ||||||| |||||||||||||||||| ||| |||| ||||||||| || |||||||    
T  955848 aggtttttctcggcagttaactgcagccgatttttgaattcctcagcagttaactg 955793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15995778 - 15995723
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactg 56  Q
    |||||||||||||||||||||||||| || ||||  ||||||||  ||||||||||    
T  15995778 aggttttcctcggcagttaactgcagccggatttcaaattcctcggcatttaactg 15995723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19069243 - 19069188
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactg 56  Q
    |||||||||||||||||||||||||| || ||||  ||||||||  ||||||||||    
T  19069243 aggttttcctcggcagttaactgcagccggatttcaaattcctcggcatttaactg 19069188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 29700319 - 29700398
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    |||||||||||||||||||||||||| ||  | || ||||||||| || ||||||||| ||| || ||||  ||||||||    
T  29700319 aggttttcctcggcagttaactgcagccggttattgaattcctcagcagttaactgtcgaggagacaaaagcgtatttta 29700398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 56138308 - 56138269
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaatt 40  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  56138308 aggttttcctcggcagttaactgcagccggatttttaatt 56138269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33383861 - 33383807
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaact 55  Q
    |||||||||||||||||||||||||||||  |||| || ||||| ||| ||||||    
T  33383861 aggttttcctcggcagttaactgcagtcggtttttaaaatcctcgacaattaact 33383807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34151670 - 34151616
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaact 55  Q
    |||||||||||||||||||||||||| ||| |||| |||| |||  |||||||||    
T  34151670 aggttttcctcggcagttaactgcagccgatttttgaattactcggcatttaact 34151616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 48256587 - 48256625
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattc 41  Q
    |||||||||||||||||||||||| || |||||||||||    
T  48256587 gttttcctcggcagttaactgcagccggatttttaattc 48256625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 37959739 - 37959816
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    ||||||||||||||||||||||||  |  | || |||||||||||| ||||||| | ||||| |||||  ||||||||    
T  37959739 gttttcctcggcagttaactgcagctggttattaaattcctcaacagttaactgccgagggggtaaaaacgtatttta 37959816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 1041988 - 1041948
Alignment:
Q  4 ttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    |||| ||||||||||||||||||||| |||| |||||||||    
T  1041988 tttttctcggcagttaactgcagtcggatttctaattcctc 1041948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 11494599 - 11494508
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctca 93  Q
    |||||||||||||||||||||||||| ||  |||| |||||||| ||| |||| || | |||||| ||||  |||||||| |  |||||||||    
T  11494599 aggttttcctcggcagttaactgcagccg-gttttgaattcctcgacagttaattgccgaggggacaaaaacgtattttactcgtgtttctca 11494508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 21472504 - 21472544
Alignment:
Q  4 ttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    ||||||||||||||||||||||| ||| |||| ||||||||    
T  21472504 ttttcctcggcagttaactgcagccgatttttgaattcctc 21472544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 42499465 - 42499386
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    ||||||||||||||||||||||||||||| ||||  ||||||||  || ||||||||| | ||| |||||| ||||||||    
T  42499465 aggttttcctcggcagttaactgcagtcggatttcaaattcctcggcaattaactgtcgaaggggtaaaatcgtatttta 42499386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 47776388 - 47776289
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcagtcttat 100  Q
    |||||||||||||||||||||||||| |  |||||||||| |||  || ||||||||| |||||  ||||| |||||||| |  |||||||||| |||||    
T  47776388 aggttttcctcggcagttaactgcagccagatttttaatttctcggcagttaactgtcgagggggcaaaatcgtattttactcgtgtttctcagccttat 47776289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 10705304 - 10705225
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    ||||||| |||||||||||||||||| ||| ||||||||| |||  || ||||||| |||||||  |||| |||||||||    
T  10705304 aggtttttctcggcagttaactgcagccgattttttaatttctcggcagttaactgccaaggggggaaaaatgtatttta 10705225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 27453615 - 27453710
Alignment:
Q  5 tttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcagtcttat 100  Q
    |||||||||||||||||||||| || ||||||||||||||  || ||||||| | |||||  ||| | |||||||| | |||||||| || |||||    
T  27453615 tttcctcggcagttaactgcagccggatttttaattcctcggcagttaactgccgagggggcaaagtcgtattttacttatgtttctaagccttat 27453710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 29593349 - 29593424
Alignment:
Q  5 tttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    |||||||||||||||||||||| || | ||  ||||||||  || ||||||||| ||||| |||||||||||||||    
T  29593349 tttcctcggcagttaactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaattgtatttta 29593424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 30355256 - 30355351
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcagtc 96  Q
    |||||||||||||||||||||||||| ||| |||| ||||| ||| || ||||||| | |||||  ||||  |||||||| |  ||||||||||||    
T  30355256 aggttttcctcggcagttaactgcagccgatttttgaattcttcagcaattaactgccgagggggcaaaagcgtattttactcgtgtttctcagtc 30355351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34742412 - 34742467
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactg 56  Q
    ||||||||||||||||||||||||||||  |||| ||||||||| ||| |||||||    
T  34742412 aggttttcctcggcagttaactgcagtcagatttctaattcctcgacaattaactg 34742467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36392181 - 36392118
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaagggg 64  Q
    ||||||||||||||||||||| |||  ||| |||| |||||||||||| ||||||||| |||||    
T  36392181 aggttttcctcggcagttaaccgcaaccgatttttgaattcctcaacagttaactgtcgagggg 36392118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 5537926 - 5537885
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  5537926 gttttcctcggcagttaactgcagccgaatttctaattcctc 5537885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 39460605 - 39460517
Alignment:
Q  5 tttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctca 93  Q
    ||||||| |||||||||||||| || ||||||||||||||  || | ||||| | || ||||||||| |||||||| |  |||||||||    
T  39460605 tttcctcagcagttaactgcagccggatttttaattcctcggcaatcaactgccgagaggataaaatcgtattttactcgtgtttctca 39460517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40587717 - 40587673
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctca 45  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||    
T  40587717 aggttttcctcgacagttaactgcagtcggatttctaattcctca 40587673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9494823 - 9494866
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    |||||||||||||||||||||||||| ||  |||||||||||||    
T  9494823 aggttttcctcggcagttaactgcagccggttttttaattcctc 9494866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 34622551 - 34622492
Alignment:
Q  5 tttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaagggg 64  Q
    |||||||| ||||||||||||||||  || ||||||||||  || |||||||||||||||    
T  34622551 tttcctcgacagttaactgcagtcggtttcttaattcctctgcagttaactgtcaagggg 34622492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17840907 - 17840940
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaattt 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  17840907 aggttttcctcggcagttaactgcagtcggattt 17840940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 29592597 - 29592536
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaagggg 64  Q
    |||||| ||||||||||| |||||||| ||||  |||||||| ||| ||||||| |||||||    
T  29592597 gttttcatcggcagttaattgcagtcggatttcaaattcctcgacagttaactgccaagggg 29592536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 11629780 - 11629744
Alignment:
Q  8 cctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    ||||||||||||||||||| || ||||||||||||||    
T  11629780 cctcggcagttaactgcagccggatttttaattcctc 11629744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 45361702 - 45361662
Alignment:
Q  4 ttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    |||| |||||||||||||||||| || ||||||||||||||    
T  45361702 tttttctcggcagttaactgcagccggatttttaattcctc 45361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 27276391 - 27276470
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    |||||||||||||||||||||||||| || ||||  ||||||||| || ||||||| | ||||| |||||| ||||||||    
T  27276391 aggttttcctcggcagttaactgcagccggatttcaaattcctcagcagttaactgccgagggggtaaaatcgtatttta 27276470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 29397966 - 29397909
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtc 58  Q
    ||||||||||||||||||||||||||||| |||| ||||| |||| || |||||||||    
T  29397966 aggttttcctcggcagttaactgcagtcggatttctaatttctcagcaattaactgtc 29397909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 45137452 - 45137529
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    |||||| ||||||||||||||||| |||||||||||||||||  || ||||||| ||||| |  ||||| ||||||||    
T  45137452 gttttcatcggcagttaactgcagccgaatttttaattcctcggcaattaactgccaaggaggcaaaatcgtatttta 45137529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 30271128 - 30271076
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaact 55  Q
    ||||||||| |||||||||||||| || ||||||||||||||||| |||||||    
T  30271128 gttttcctcagcagttaactgcagccggatttttaattcctcaacctttaact 30271076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 25964867 - 25964824
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    |||||||||||||||||||||||||| || ||||||||||||||    
T  25964867 aggttttcctcggcagttaactgcagccggatttttaattcctc 25964824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3795393 - 3795327
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggata 67  Q
    |||||||||||||||||||||||||| || ||||  |||||||| ||| ||||||| | ||||||||    
T  3795393 aggttttcctcggcagttaactgcagccggatttcaaattcctcgacagttaactgccgaggggata 3795327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 16583589 - 16583638
Alignment:
Q  4 ttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaa 53  Q
    |||| |||||||||||||||||| ||||||||||||||||| ||| ||||    
T  16583589 tttttctcggcagttaactgcagccgaatttttaattcctcgacagttaa 16583638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 24512223 - 24512130
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcag 94  Q
    |||||||  |||||| ||||||||||  |  ||||||||||||||||| ||||||||| ||||| |||||  |||||||| |  ||||||||||    
T  24512223 aggtttttttcggcaattaactgcagctggttttttaattcctcaacagttaactgtcgagggggtaaaaacgtattttacttgtgtttctcag 24512130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 23786150 - 23786081
Alignment:
Q  31 atttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcagtcttat 100  Q
    ||||||||||||||  || ||||||| | |||||| |||||  ||||||| ||||||||||||| |||||    
T  23786150 atttttaattcctcggcagttaactgccgaggggacaaaatcatattttactaatgtttctcagccttat 23786081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 36255732 - 36255785
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactg 56  Q
    |||||||||||||||||||||||  ||  ||||||||||||| ||| |||||||    
T  36255732 gttttcctcggcagttaactgcaaccgtgtttttaattcctcgacagttaactg 36255785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 8268766 - 8268866
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcagtcttat 100  Q
    ||||||| ||||  |||||| ||||| ||| ||||  |||||| |||| ||||||| | |||||| ||||| |||||||| ||||||   ||||||||||    
T  8268766 aggtttttctcgatagttaattgcagccgatttttgcattccttaacagttaactgccgaggggacaaaatcgtattttactaatgtacgtcagtcttat 8268865  T
Q  101 a 101  Q
    |    
T  8268866 a 8268866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30273167 - 30273207
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattc 41  Q
    ||||||||||||||||||||||| || || |||||||||||    
T  30273167 aggttttcctcggcagttaactgtagccggatttttaattc 30273207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3941 - 3872
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaa 70  Q
    |||||||||||||||||||||||||| ||| |||| |||||||| ||| ||||||| | |||||| ||||    
T  3941 aggttttcctcggcagttaactgcagccgatttttgaattcctcgacagttaactgccgaggggacaaaa 3872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 34691681 - 34691588
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcag 94  Q
    |||||||||||| ||||||||||||| || ||||||| ||||||  || ||||||| | ||| |  |||||||||||||| || ||||||||||    
T  34691681 aggttttcctcgacagttaactgcagccggatttttatttcctcggcagttaactgccgaggaggcaaaattgtattttactagtgtttctcag 34691588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 45101872 - 45101944
Alignment:
Q  8 cctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    ||||||||||||||||||| ||  |||| |||||||||||| ||||||| | |||||||||||  ||||||||    
T  45101872 cctcggcagttaactgcagccggtttttgaattcctcaacaattaactgccgaggggataaaaacgtatttta 45101944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 42756215 - 42756160
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactg 56  Q
    |||||||||||||||||||||||||  || |||||||||||||| ||| |||||||    
T  42756215 aggttttcctcggcagttaactgcaaccggatttttaattcctcgacagttaactg 42756160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 46344993 - 46344938
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactg 56  Q
    |||||||||||||||||||||||||| ||| |||| |||||||| ||| |||||||    
T  46344993 aggttttcctcggcagttaactgcagccgatttttgaattcctcgacagttaactg 46344938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 7843038 - 7843120
Alignment:
Q  5 tttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgt 87  Q
    ||||||| ||||||||||||||||| | ||  |||| |||  || ||||||| | ||||||||||||||||||||| ||||||    
T  7843038 tttcctctgcagttaactgcagtcggaattcaaatttctcggcagttaactgccgaggggataaaattgtattttactaatgt 7843120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 29929482 - 29929420
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggg 63  Q
    |||||||||||||||||||| ||||| ||  |||| |||||||||||| ||||||||| ||||    
T  29929482 aggttttcctcggcagttaattgcagccggtttttgaattcctcaacagttaactgtcgaggg 29929420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 29978636 - 29978574
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggg 63  Q
    |||||||||||||||||||| ||||| ||  |||| |||||||||||| ||||||||| ||||    
T  29978636 aggttttcctcggcagttaattgcagccggtttttgaattcctcaacagttaactgtcgaggg 29978574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 48888793 - 48888753
Alignment:
Q  4 ttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  48888793 ttttcctcggcagttaactgcagccggatttttaattcctc 48888753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30256020 - 30256063
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    |||||||||||||||||||||||||| ||  |||||||||||||    
T  30256020 aggttttcctcggcagttaactgcagccggttttttaattcctc 30256063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 41579741 - 41579820
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    |||||||||||||||||||||||||| ||  | || ||||||||| || ||||||| | |||||  ||||| ||||||||    
T  41579741 aggttttcctcggcagttaactgcagccggttattgaattcctcagcaattaactgccgagggggaaaaatcgtatttta 41579820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 49219808 - 49219851
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    |||||||||||||||||||||||||| || |||| |||||||||    
T  49219808 aggttttcctcggcagttaactgcagccggatttctaattcctc 49219851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 49268864 - 49268915
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaac 54  Q
    |||||||||||||||||||||||  || |||||||||||||| ||| |||||    
T  49268864 gttttcctcggcagttaactgcaaccggatttttaattcctccacagttaac 49268915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2743454 - 2743388
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggata 67  Q
    |||||||||||||||||||||||||| || ||||  ||||||||  || ||||||| | ||||||||    
T  2743454 aggttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgaggggata 2743388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 2745229 - 2745303
Alignment:
Q  8 cctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttatt 82  Q
    ||||| ||||||||||||| |||||||  ||||||||| || ||||||  | ||||| |||||| ||||||||||    
T  2745229 cctcgacagttaactgcagccgaatttcaaattcctcagcagttaactaccgagggggtaaaatcgtattttatt 2745303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 49196467 - 49196565
Alignment:
Q  2 ggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcagtcttat 100  Q
    |||||||||||| |||||||||||  || |||||||||||||| ||| ||| || || |||||  ||||  |||||||| |  |||||||||| |||||    
T  49196467 ggttttcctcggtagttaactgcaaccggatttttaattcctcgacagttagctatcgagggggcaaaaacgtattttactcgtgtttctcagccttat 49196565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4002522 - 4002566
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctca 45  Q
    |||||||||||||||||||||||||| || ||||  |||||||||    
T  4002522 aggttttcctcggcagttaactgcagccggatttcaaattcctca 4002566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 20918028 - 20918068
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattc 41  Q
    ||||||||||||||||||||||| || || |||||||||||    
T  20918028 aggttttcctcggcagttaactgtagccggatttttaattc 20918068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 20926990 - 20927030
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattc 41  Q
    ||||||||||||||||||||||| || || |||||||||||    
T  20926990 aggttttcctcggcagttaactgtagccggatttttaattc 20927030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 41276880 - 41276932
Alignment:
Q  4 ttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactg 56  Q
    |||| |||||||||||||||||| ||||||| ||||||||||||| |||||||    
T  41276880 tttttctcggcagttaactgcagccgaatttctaattcctcaacagttaactg 41276932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 43188126 - 43188030
Alignment:
Q  5 tttcctcggcagttaactgc-agtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcagtcttat 100  Q
    |||||||||||||||||| | || || |||||||||||||| ||| ||||||||| |||||  ||||| |||||||| |  |||||||||| |||||    
T  43188126 tttcctcggcagttaactaccagccggatttttaattcctcgacaattaactgtcgagggggcaaaatcgtattttactcgtgtttctcagccttat 43188030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26451536 - 26451482
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaact 55  Q
    |||||||||||||||||||||| ||| ||||||| |||||||||| || ||||||    
T  26451536 aggttttcctcggcagttaactacagccgaatttctaattcctcagcagttaact 26451482  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40077267 - 40077305
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaat 39  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  40077267 aggttttcctcggcagttaactgcagtcggatttttaat 40077305  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 41855424 - 41855331
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcag 94  Q
    |||||||||||||||||||||||||| ||| |||| ||||| || ||| ||||||| | ||| |  ||||  |||||||| | |||||||||||    
T  41855424 aggttttcctcggcagttaactgcagccgatttttgaattcttcgacagttaactgccgaggaggcaaaaacgtattttactcatgtttctcag 41855331  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18438690 - 18438635
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactg 56  Q
    |||||||||||||||||||||||||| ||  | || |||||||||||| |||||||    
T  18438690 aggttttcctcggcagttaactgcagccggttattgaattcctcaacagttaactg 18438635  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34823033 - 34823088
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactg 56  Q
    |||||||||||| || |||||||||| || |||||||||||||| ||| |||||||    
T  34823033 aggttttcctcgacaattaactgcagccgtatttttaattcctcgacagttaactg 34823088  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 35962363 - 35962277
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgt 87  Q
    ||||||||||||||||||||||| || || ||||  |||||||| ||| ||||||| | || ||  ||||| |||||||| ||||||    
T  35962363 aggttttcctcggcagttaactgtagccggatttcaaattcctcgacagttaactgccgagagggcaaaatcgtattttactaatgt 35962277  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 28646266 - 28646307
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    |||||||||||||||||||||||| ||| |||| ||||||||    
T  28646266 gttttcctcggcagttaactgcagccgatttttaaattcctc 28646307  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 28650850 - 28650891
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    |||||||||||||||||||||||| ||| |||| ||||||||    
T  28650850 gttttcctcggcagttaactgcagccgatttttaaattcctc 28650891  T

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Target: scaffold1379 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 451 - 550
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcagtcttat 100  Q
    |||||||||||| ||||||||||||| || ||| ||||||| ||  || ||||||| | ||||   ||||| |||||||| |  ||||||||||||||||    
T  451 aggttttcctcgacagttaactgcagccggattattaattcttcggcagttaactgccgagggagcaaaatcgtattttactcgtgtttctcagtcttat 550  T

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Target: scaffold0494 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 887 - 808
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    |||||||||||||||||||||| ||| |||||||  |||||||   || ||||||| | ||||| |||||| ||||||||    
T  887 aggttttcctcggcagttaactacagccgaatttcaaattcctaggcagttaactgccgagggggtaaaatcgtatttta 808  T

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Target: scaffold0341 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 17372 - 17447
Alignment:
Q  5 tttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtatttta 80  Q
    |||||||||||||||||||||| || ||||  ||||||||  || ||||||| | ||||| |||||| ||||||||    
T  17372 tttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggggtaaaatcgtatttta 17447  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18001269 - 18001215
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactg 56  Q
    |||||||| ||||||||||||||||| ||  ||||||||||||||||| |||||||    
T  18001269 aggttttcttcggcagttaactgcagccg-gtttttaattcctcaacagttaactg 18001215  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31768809 - 31768766
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    ||||||||||||||| |||||||||| || ||||||||||||||    
T  31768809 aggttttcctcggcaattaactgcagccggatttttaattcctc 31768766  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 35021282 - 35021373
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattcctcaacatttaactgtcaaggggataaaattgtattttattaatgtttctcag 94  Q
    |||||||||||||||||||||||| ||  |||| ||||| ||  |||||||||| | |||||  |||| ||||||||| |  ||||||||||    
T  35021282 gttttcctcggcagttaactgcagccggtttttgaattcttccgcatttaactgccgagggggcaaaagtgtattttactcgtgtttctcag 35021373  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 32643538 - 32643580
Alignment:
Q  1 aggttttcctcggcagttaactgcagtcgaatttttaattcct 43  Q
    |||||||||||| ||||||||||||| || |||||||||||||    
T  32643538 aggttttcctcgacagttaactgcagccggatttttaattcct 32643580  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 8193228 - 8193269
Alignment:
Q  3 gttttcctcggcagttaactgcagtcgaatttttaattcctc 44  Q
    |||||||||||||||||||||||| ||  |||||||||||||    
T  8193228 gttttcctcggcagttaactgcagccgtgtttttaattcctc 8193269  T

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