View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_low_30 (Length: 241)
Name: NF4001_low_30
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_low_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 43984999 - 43984774
Alignment:
| Q |
16 |
caattgaatgtgttagaacttagaaattagaatctcttcttgtgaatatatatgtatacttttttggtgtatatactgtaacatataccttggttattgc |
115 |
Q |
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| T |
43984999 |
caattgaatgtgttagaacttagaaattagaatctcttcttgtgaatatatatgtatacttttttggtgtatatactgtaacatataccttggttattgc |
43984900 |
T |
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| Q |
116 |
cacatttgagaatttgtggaattagctctctgtatttttatctctagtgagctaattttaataagtgagcttcaaattatacactggaagcttatgatta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43984899 |
cacatttgagaatttgtggaattagctctctgtatttttatctctagtgagctaattttaataagtgagcttcaaattatacactggaagcttatgatta |
43984800 |
T |
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| Q |
216 |
ttttgtatctggtatagttaagaatt |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43984799 |
ttttgtatctggtatagttaagaatt |
43984774 |
T |
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