View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_low_32 (Length: 238)
Name: NF4001_low_32
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3057915 - 3057694
Alignment:
| Q |
1 |
actaaagtgcagaaacgtcctggagaatggggtttcgtgaacaaatcagccggctggtcaagaatgccaatggagataagaagttcaccacaaaggaaat |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3057915 |
actaaagtgcggaaacgtcctggagaatggggtttcgtgaacaaatcagccggctggtcaagaatgccaatggagataagaagttcaccacaaaggaaat |
3057816 |
T |
|
| Q |
101 |
gttgacaaatgaagtagaaatcaatttcaatatgtttggttcgctcatggaaaacatcattgtgagcaatttgaatggcactatgattgtcacaatatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3057815 |
gttgacaaatgaagtagaaatcaatttcaatatgtttggttcgctcatggaaaacatcattgtgagcaatttgaatggcactatgattgtcacaatatag |
3057716 |
T |
|
| Q |
201 |
gtgaagactgtgatgtctctaa |
222 |
Q |
| |
|
||||||||| |||||||||||| |
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|
| T |
3057715 |
gtgaagactatgatgtctctaa |
3057694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2511384 - 2511152
Alignment:
| Q |
1 |
actaaagtgcagaaacgtcctggagaatggggtttcgtgaacaaatcagccggctggtcaagaatgccaatggagataa---gaagttcaccacaaagga |
97 |
Q |
| |
|
|||||||||| ||| || || ||||| || | ||| ||||||||||| || |||||||||||| ||||||||||||||| |||||||| ||| ||||| |
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| T |
2511384 |
actaaagtgcggaagcgaccaggagactgagcttttgtgaacaaatctgctggctggtcaagagtgccaatggagataatatgaagttcatcacgaagga |
2511285 |
T |
|
| Q |
98 |
aatgttgacaaatgaagtagaaatcaatttcaatatgtttggttcgctcatggaaaacatcattgtgagcaatttgaatggcactatgattgtcacaata |
197 |
Q |
| |
|
||| |||| |||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||| ||||| ||||||| |
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| T |
2511284 |
gatgctgacgaatgaagtgacaatcaatttcaatatattttgttcgctcatggaaaacatcattgtgggcaatttgaattgcactacgattgccacaata |
2511185 |
T |
|
| Q |
198 |
ta--------ggtgaagactgtgatgtctctaa |
222 |
Q |
| |
|
|| ||||||||||||||||||||||| |
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| T |
2511184 |
tagatcagttggtgaagactgtgatgtctctaa |
2511152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16505076 - 16504844
Alignment:
| Q |
1 |
actaaagtgcagaaacgtcctggagaatggggtttcgtgaacaaatcagccggctggtcaagaatgccaatggagataaga---agttcaccacaaagga |
97 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| || | |
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| T |
16505076 |
actaaagtgcggaaacgtcctggagaatgaggttttgtgaacaaatcagccggctgatcaagagtgccaatggagataagatgaagttcaccacggagaa |
16504977 |
T |
|
| Q |
98 |
aatgttgacaaatgaagtagaaatcaatttcaatatgtttggttcgctcatggaaaacatcattgtgagcaatttgaatggcactatgattgtcacaata |
197 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||| |
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|
| T |
16504976 |
gatgttgacgaatgaagtggcaatcaatttcaatatgtttggttcgctcgtggaaaacatcattgtgggcaatttgaatggcaatgcgattgtcacaata |
16504877 |
T |
|
| Q |
198 |
ta--------ggtgaagactgtgatgtctctaa |
222 |
Q |
| |
|
|| ||||||||||||||||||||||| |
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|
| T |
16504876 |
tagatcagttggtgaagactgtgatgtctctaa |
16504844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 29993019 - 29992823
Alignment:
| Q |
7 |
gtgcagaaacgtcctggagaatggggtttcgtgaacaaatcagccggctggtcaagaatgccaatggagataaga---agttcaccacaaaggaaatgtt |
103 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||| |||||| ||| || | ||||| |
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|
| T |
29993019 |
gtgcggaaacgtcctggagaatgaggttttgtgaacaaatcagccgactggtcaagcgtgccaatggagataagatgaagttcaacacggagaagatgtt |
29992920 |
T |
|
| Q |
104 |
gacaaatgaagtagaaatcaatttcaatatgtttggttcgctcatggaaaacatcattgtgagcaatttgaatggcactatgattgtcacaatatag |
200 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| |
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| T |
29992919 |
gacgaatgaagtgacaatcaatttcaatatgtttggttcgctcatggaaaacatcattgtgggcaatttgaatggcactgcgattatcacaatatag |
29992823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 24429596 - 24429774
Alignment:
| Q |
22 |
ggagaatggggtttcgtgaacaaatcagccggctggtcaagaatgccaatggagataaga---agttcaccacaaaggaaatgttgacaaatgaagtaga |
118 |
Q |
| |
|
|||||||| ||||| || ||||||||||| |||||||||||| |||||||||||| ||| |||||| || ||| | |||||||| |||||||| |
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| T |
24429596 |
ggagaatgaggttttgtaaacaaatcagctggctggtcaagagtgccaatggagacaagctgtagttcatgacgaagaagatgttgacgaatgaagtgac |
24429695 |
T |
|
| Q |
119 |
aatcaatttcaatatgtttggttcgctcatggaaaacatcattgtgagcaatttgaatggcactatgattgtcacaata |
197 |
Q |
| |
|
||||||| || ||||| || || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
24429696 |
aatcaatctctatatgcttagtgcgctcatggaaaacatcattgtgggcaatttgaatggcactgcgattgtcacaata |
24429774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2385641 - 2385879
Alignment:
| Q |
1 |
actaaagtgcagaaacgtcctggagaatggggtttcgtgaacaaatcagccggctggtcaagaatg------ccaatggagataa---gaagttcaccac |
91 |
Q |
| |
|
|||||||||| |||| ||||| ||||||| ||||| ||||||||| ||| | ||| ||||||||| ||||||||||||| |||||||||||| |
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|
| T |
2385641 |
actaaagtgcggaaatgtcctagagaatgaggttttgtgaacaaaccagtcagctagtcaagaatagtactaccaatggagataatatgaagttcaccac |
2385740 |
T |
|
| Q |
92 |
aaaggaaatgttgacaaatgaagtagaaatcaatttcaatatgtttggttcgctcatggaaaacatcattgtgagcaatttgaatggcactatgattgtc |
191 |
Q |
| |
|
|| | ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |
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|
| T |
2385741 |
ggagaagatgttgatgaatgaagtgacgatcaatttcaatatgtttggttcgctcatggaaaacatcattgtgagcaatttgaatggcaatgtaattgtc |
2385840 |
T |
|
| Q |
192 |
acaatata--------ggtgaagactgtgatgtctctaa |
222 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
2385841 |
acaatatataccagttggtgaagactgtgatgtctctaa |
2385879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 53015134 - 53015336
Alignment:
| Q |
1 |
actaaagtgcagaaacgtcctggagaatggggtttcgtgaacaaatcagccggctggtcaagaatgccaatggagataa---gaagttcaccacaaagga |
97 |
Q |
| |
|
|||||||||| ||| ||||||||| |||| ||||| ||||||||||||||||| || |||||| ||||||||||||||| |||||||||||| || | |
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|
| T |
53015134 |
actaaagtgcggaagcgtcctggacaatgaggttttgtgaacaaatcagccggttgatcaagagtgccaatggagataagatgaagttcaccacggagaa |
53015233 |
T |
|
| Q |
98 |
aatgttgacaaatgaagtagaaatcaatttcaatatgtttggttcgctcatggaaaacatcattgtgagcaatttgaatggcactatgattgtcacaata |
197 |
Q |
| |
|
||| |||| |||||||| |||| ||||||||||||||||||||||| || |||| |||||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
53015234 |
gatgctgacgaatgaagtgacaatcgatttcaatatgtttggttcgctcgtgaaaaatgtcattgtgggcaatttgaatcgcacttctattgtcacaata |
53015333 |
T |
|
| Q |
198 |
tag |
200 |
Q |
| |
|
||| |
|
|
| T |
53015334 |
tag |
53015336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 17407862 - 17408022
Alignment:
| Q |
1 |
actaaagtgcagaaacgtcctggagaatggggtttcgtgaacaaatcagccggctggtcaagaatgccaatggagataaga---agttcaccacaaagga |
97 |
Q |
| |
|
|||||||||| |||| || |||||||||| ||||| |||||||||| | ||||||||||||| ||||| | ||||||||| |||| |||||| || | |
|
|
| T |
17407862 |
actaaagtgcggaaatgttctggagaatgaggttttgtgaacaaatgaaccggctggtcaagcgtgccattagagataagatgaagtttaccacagagaa |
17407961 |
T |
|
| Q |
98 |
aatgttgacaaatgaagtagaaatcaatttcaatatgtttggttcgctcatggaaaacatc |
158 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
17407962 |
aatgttgacgaatgaagtgataatcaatttcaataggtttgattcgctcatggaaaacatc |
17408022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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