View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_low_33 (Length: 237)
Name: NF4001_low_33
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11169890 - 11169670
Alignment:
| Q |
1 |
ttagacgtctctgttacggaaaaagcctcgggaattgataaaaggtttaaaatagtaaatgacaagggaagactgtcgcaggaggaagtttataagatga |
100 |
Q |
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| T |
11169890 |
ttagacgtctctgttacggaaaaagcctcgggaattgataaaaggtttaaaatagtaaatgacaagggaagactgtcacaggaggaagttgataggatga |
11169791 |
T |
|
| Q |
101 |
taagagaagctgagaaatacaaagatgaagacatgagacataggaagaaggttgaagcgagaaatgcactagagatgtacgcatacaatatgagggaatt |
200 |
Q |
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| T |
11169790 |
taagagaagctgacaaatacaaagatgaagacatgaggcataggaagaaggttgaagcgagaaatgcactagagatgtacgcatacaatatgagggaatt |
11169691 |
T |
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| Q |
201 |
cataaatgatccggatattag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
11169690 |
cataaatgatccggatattag |
11169670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 11208712 - 11208501
Alignment:
| Q |
1 |
ttagacgtctctgttacggaaaaagcctcgggaattgataaaaggtttaaaatagtaaatgacaagggaagactgtcgcaggaggaagtttataagatga |
100 |
Q |
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|||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || | | ||||| |
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| T |
11208712 |
ttagacgtctctgttacggagaaagccttcggaatcgataaaaggtttaaaatagtaaatgacaagggaagactgtcaaaggaggaaattgagaggatga |
11208613 |
T |
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| Q |
101 |
taagagaagctgagaaatacaaagatgaagacatgagacataggaagaaggttgaagcgagaaatgcactagagatgtacgcatacaatatgagggaatt |
200 |
Q |
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| T |
11208612 |
tcagtgaagctgagaaatacaaagatgaagacatgaggcataggaagaaggttgaatcgagaaatgcactagagaagtacgcatacaatatgagggattc |
11208513 |
T |
|
| Q |
201 |
cataaatgatcc |
212 |
Q |
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|||||||||||| |
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| T |
11208512 |
cataaatgatcc |
11208501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 11275265 - 11275055
Alignment:
| Q |
10 |
tctgttacggaaaaagcctcgggaattgataaaaggtttaaaatagtaaatgacaagggaagactgtcgcaggaggaagtttataagatgataagagaag |
109 |
Q |
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|||||| | ||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| || | | |||||| | |||| |
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| T |
11275265 |
tctgtttcagaaaaagacttgggaattgataaaaggtttaaaatagtaaataacaagggaagactgtcaaaagaggaaattgagaggatgatcaatgaag |
11275166 |
T |
|
| Q |
110 |
ctgagaaatacaaagatgaagacatgagacataggaagaaggttgaagcgagaaatgcactagagatgtacgcatacaatatgagggaattcataaatga |
209 |
Q |
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| T |
11275165 |
ctgagaagtacaaagatgaagacattaggcataggaaaaaggttgaagcgagaaatgcactagagaagtacgcatacaatatgagggatttcataaatga |
11275066 |
T |
|
| Q |
210 |
tccggatatta |
220 |
Q |
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||| ||||||| |
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| T |
11275065 |
tcccgatatta |
11275055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 11165602 - 11165443
Alignment:
| Q |
62 |
acaagggaagactgtcgcaggaggaagtttataagatgataagagaagctgagaaatacaaagatgaagacatgagacataggaagaaggttgaagcgag |
161 |
Q |
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|||| ||||| ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11165602 |
acaaaggaaggctgtcaaaggaggaagttgataggatgataagagaagctgagaaatacaaagatgaagacatgaggcataggaagaaggttgaagcgag |
11165503 |
T |
|
| Q |
162 |
aaatgcactagagatgtacgcatacaatatgagggaattcataaatgatccggatattag |
221 |
Q |
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|||||||||||||| ||||||||||||||||||||| | |||||||||||| ||| |||| |
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| T |
11165502 |
aaatgcactagagaggtacgcatacaatatgagggattccataaatgatccagatgttag |
11165443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 195
Target Start/End: Complemental strand, 11196012 - 11195864
Alignment:
| Q |
47 |
ttaaaatagtaaatgacaagggaagactgtcgcaggaggaagtttataagatgataagagaagctgagaaatacaaagatgaagacatgagacataggaa |
146 |
Q |
| |
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|||||||| ||| ||| ||||||||| |||| |||||||| || | | |||||| | |||||||||||| |||||||||||||||| ||| ||| ||| |
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| T |
11196012 |
ttaaaataataagtgataagggaagattgtcaaaggaggaaattgagaggatgatcaaagaagctgagaagtacaaagatgaagacaagaggtatatgaa |
11195913 |
T |
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| Q |
147 |
gaaggttgaagcgagaaatgcactagagatgtacgcatacaatatgagg |
195 |
Q |
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|||| | ||||||||| ||| | |||||| ||| |||||||| |||||| |
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| T |
11195912 |
gaagctagaagcgagagatgtattagagaagtatgcatacaacatgagg |
11195864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 195
Target Start/End: Complemental strand, 11155565 - 11155417
Alignment:
| Q |
47 |
ttaaaatagtaaatgacaagggaagactgtcgcaggaggaagtttataagatgataagagaagctgagaaatacaaagatgaagacatgagacataggaa |
146 |
Q |
| |
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|||||||| ||| |||||||||||| |||| ||||||| || | | || ||| | |||||||||||| |||||||||||||||| ||| ||| ||| |
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| T |
11155565 |
ttaaaataataagtgacaagggaaggttgtcaaaggaggatattgagaggaagatcaaagaagctgagaagtacaaagatgaagacaagaggtatatgaa |
11155466 |
T |
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| Q |
147 |
gaaggttgaagcgagaaatgcactagagatgtacgcatacaatatgagg |
195 |
Q |
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|||||| ||||||||| || |||||||| ||| |||||||| |||||| |
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| T |
11155465 |
gaaggtagaagcgagagttgtactagagacgtatgcatacaacatgagg |
11155417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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