View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_low_4 (Length: 471)
Name: NF4001_low_4
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 37 - 355
Target Start/End: Original strand, 16699267 - 16699574
Alignment:
| Q |
37 |
gattaattcagttagtgtacatgtaagagggcattagttaagttaccggaagtgctatcgacgagtttgatgattttgttgagtgtttgtaagaagacaa |
136 |
Q |
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| T |
16699267 |
gattaattcagttagtgtacatgtaagagggcattagttaagttaccggaagtgctatcgacgagtttgatgattttgttgagtgtttgtaagaagacaa |
16699366 |
T |
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| Q |
137 |
aggagcttcagttccaattttt-cactaattgatttgttgataagaattcaattcatattatgtggatcaatatttaagcatttggctttctcttactct |
235 |
Q |
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| T |
16699367 |
aggagcttcagttccaatttttccactaattgattagttgataagaattcaattcatattatgtggatcaatatttaa------------ctcttactct |
16699454 |
T |
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| Q |
236 |
tatgaacacaaatcaaactcagctaaaatgttatttgtaaaaaaggaataaaattaaactcattaattctaaacaatcatatttgttaatttgcataact |
335 |
Q |
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| T |
16699455 |
tatgaacacaaatcaaactcagctaaaatgttatttgtaagaaaggaataaaattaaactcattaattctaaacaatcatatttgttaatttgcataact |
16699554 |
T |
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| Q |
336 |
ttcttcataatttcgttgac |
355 |
Q |
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|||||||||||||| ||||| |
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| T |
16699555 |
ttcttcataatttcattgac |
16699574 |
T |
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