View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4001_low_5 (Length: 449)

Name: NF4001_low_5
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4001_low_5
NF4001_low_5
[»] chr5 (6 HSPs)
chr5 (8-331)||(14627857-14628182)
chr5 (335-432)||(14627717-14627815)
chr5 (356-411)||(39298422-39298477)
chr5 (356-411)||(17361935-17361990)
chr5 (356-411)||(33986444-33986499)
chr5 (353-406)||(5655261-5655314)
[»] chr1 (4 HSPs)
chr1 (116-216)||(33247878-33247985)
chr1 (116-216)||(33268050-33268157)
chr1 (29-98)||(33247806-33247876)
chr1 (29-98)||(33267978-33268048)
[»] chr7 (2 HSPs)
chr7 (351-406)||(15328828-15328883)
chr7 (365-406)||(15328985-15329026)
[»] scaffold0318 (1 HSPs)
scaffold0318 (355-407)||(2024-2076)
[»] chr2 (3 HSPs)
chr2 (356-412)||(13563185-13563241)
chr2 (356-411)||(34997081-34997136)
chr2 (356-414)||(13562658-13562716)
[»] chr8 (5 HSPs)
chr8 (356-411)||(13987327-13987382)
chr8 (355-396)||(18838719-18838760)
chr8 (356-406)||(28009229-28009279)
chr8 (356-406)||(28066532-28066582)
chr8 (356-390)||(31588349-31588383)
[»] chr4 (2 HSPs)
chr4 (364-406)||(4710288-4710330)
chr4 (356-406)||(42451828-42451878)
[»] chr3 (2 HSPs)
chr3 (355-411)||(46181245-46181301)
chr3 (367-411)||(51811808-51811852)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 8 - 331
Target Start/End: Complemental strand, 14628182 - 14627857
Alignment:
Q  8 gagcacagatttacaaacttttacagaaaggaatattgtgcaggaactaggaattgcaggtcacgtatccaccgagtctttgagagcttggttctctccc 107  Q
    ||||||| |||||||||   || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14628182 gagcacatatttacaaaaaatttcagaaaggaatatagtgcaggaactaggaattgcaggtcacgtatccaccgagtctttgagagcttggttctctccc 14628083  T
Q  108 acccaattaaccacctgatattccactctaccttccctttcatatttattcaatacgcacataactaatagcataattaataaacaaatataatcacata 207  Q
    |||||||||||||| |||||  || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14628082 acccaattaaccacttgata-acccctctacctt-cctttcatatttattcaatacgcacataactaatagcataattaataaacaaatataatcacata 14627985  T
Q  208 atacacaatcaaaaggaatgctttt-gggggtaaaagaa---tattaatgctttgacaaggaattgaaaagaaatgcttttacaccactcatgctgttgt 303  Q
    ||||||||| ||||||||||||||| |||||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14627984 atacacaattaaaaggaatgcttttggggggtaaaagaatattattaattctttgacaaggaattgaaaagaaatgcttttacaccactcacgctgttgt 14627885  T
Q  304 ttggaacgtgacttaagtcacgtacgtt 331  Q
    | ||||||||||||||||||||||||||    
T  14627884 tcggaacgtgacttaagtcacgtacgtt 14627857  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 335 - 432
Target Start/End: Complemental strand, 14627815 - 14627717
Alignment:
Q  335 tgagttaaattacgtgaagaatattttagaaagtttggttgggagtgatcaattttttatggaagaagagcaatttt-ttattagtgattatcaataat 432  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||| | ||||||| | |||||| ||||||||||||    
T  14627815 tgagttaaattacgtgaagagtattttaaaaagtttggttgggagtgaccaatttttgatggaagaaaaacaattttctaattagttattatcaataat 14627717  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 39298477 - 39298422
Alignment:
Q  356 tattttagaaagtttggttgggagtgatcaattttttatggaagaagagcaatttt 411  Q
    |||||||| || ||| ||||||||||| ||||||||||||||||||||||||||||    
T  39298477 tattttaggaaatttagttgggagtgagcaattttttatggaagaagagcaatttt 39298422  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 411
Target Start/End: Original strand, 17361935 - 17361990
Alignment:
Q  356 tattttagaaagtttggttgggagtgatcaattttttatggaagaagagcaatttt 411  Q
    |||||| | ||||||| | |||||||| | ||||||||||||||||||||||||||    
T  17361935 tattttgggaagtttgatagggagtgagcgattttttatggaagaagagcaatttt 17361990  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 411
Target Start/End: Original strand, 33986444 - 33986499
Alignment:
Q  356 tattttagaaagtttggttgggagtgatcaattttttatggaagaagagcaatttt 411  Q
    |||||||| |||| ||||||||||||| | |||||| |||| ||||||||||||||    
T  33986444 tattttaggaagtgtggttgggagtgagcgatttttaatgggagaagagcaatttt 33986499  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 5655314 - 5655261
Alignment:
Q  353 gaatattttagaaagtttggttgggagtgatcaattttttatggaagaagagca 406  Q
    ||||||||| | |||||||||||| || || ||||||||||||| |||||||||    
T  5655314 gaatattttcggaagtttggttggaagcgaacaattttttatgggagaagagca 5655261  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 33247878 - 33247985
Alignment:
Q  116 aaccacctgatattccactctaccttccctttcatatttattc-------aatacgcacataactaatagcataattaataaacaaatataatcacataa 208  Q
    |||||| |||||  ||||||| ||||||||||| |||||||||       ||||| ||||||||||||| |||||||||| |||||||||||| ||||||    
T  33247878 aaccacttgataacccactctgccttccctttcctatttattctgaatacaatacacacataactaataacataattaattaacaaatataattacataa 33247977  T
Q  209 tacacaat 216  Q
    ||||||||    
T  33247978 tacacaat 33247985  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 33268050 - 33268157
Alignment:
Q  116 aaccacctgatattccactctaccttccctttcatatttattc-------aatacgcacataactaatagcataattaataaacaaatataatcacataa 208  Q
    |||||| |||||  ||||||| ||||||||||| |||||||||       ||||| ||||||||||||| |||||||||| |||||||||||| ||||||    
T  33268050 aaccacttgataacccactctgccttccctttcctatttattctgaatacaatacacacataactaataacataattaattaacaaatataattacataa 33268149  T
Q  209 tacacaat 216  Q
    ||||||||    
T  33268150 tacacaat 33268157  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 33247806 - 33247876
Alignment:
Q  29 tacagaaaggaatattgtgcaggaactaggaattgc-aggtcacgtatccaccgagtctttgagagcttgg 98  Q
    |||||||||||| ||||||||||||||||||||||| || |||||  || ||| ||||||||||| |||||    
T  33247806 tacagaaaggaacattgtgcaggaactaggaattgcaagatcacggttctaccaagtctttgagaacttgg 33247876  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 33267978 - 33268048
Alignment:
Q  29 tacagaaaggaatattgtgcaggaactaggaattgc-aggtcacgtatccaccgagtctttgagagcttgg 98  Q
    |||||||||||| ||||||||||||||||||||||| || |||||  || ||| ||||||||||| |||||    
T  33267978 tacagaaaggaacattgtgcaggaactaggaattgcaagatcacggttctaccaagtctttgagaacttgg 33268048  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 15328883 - 15328828
Alignment:
Q  351 aagaatattttagaaagtttggttgggagtgatcaattttttatggaagaagagca 406  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||||||| ||||    
T  15328883 aagaatattttcgaatgtttggttgggagtgaacaattttttatggaagaatagca 15328828  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 15328985 - 15329026
Alignment:
Q  365 aagtttggttgggagtgatcaattttttatggaagaagagca 406  Q
    |||||||| ||||||||| ||||||||||||| |||||||||    
T  15328985 aagtttggatgggagtgaacaattttttatgggagaagagca 15329026  T

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Target: scaffold0318 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 2076 - 2024
Alignment:
Q  355 atattttagaaagtttggttgggagtgatcaattttttatggaagaagagcaa 407  Q
    ||||||| ||||||||||||| ||| || ||||||||||||||||||||||||    
T  2076 atatttttgaaagtttggttgagagcgaacaattttttatggaagaagagcaa 2024  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 13563185 - 13563241
Alignment:
Q  356 tattttagaaagtttggttgggagtgatcaattttttatggaagaagagcaattttt 412  Q
    ||||||||||||||| |||| |||| | ||||||||||||||||||||| |||||||    
T  13563185 tattttagaaagtttagttgagagtaaacaattttttatggaagaagagaaattttt 13563241  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 411
Target Start/End: Original strand, 34997081 - 34997136
Alignment:
Q  356 tattttagaaagtttggttgggagtgatcaattttttatggaagaagagcaatttt 411  Q
    |||||| | |||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  34997081 tatttttggaagtttggttgggagtgaacaaattttaatgggagaagagcaatttt 34997136  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 13562716 - 13562658
Alignment:
Q  356 tattttagaaagtttggttgggagtgatcaattttttatggaagaagagcaatttttta 414  Q
    ||||||||||||||||||||| |||||  || ||||| ||| | |||||||||||||||    
T  13562716 tattttagaaagtttggttggaagtgagtaactttttgtgggaaaagagcaatttttta 13562658  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 13987382 - 13987327
Alignment:
Q  356 tattttagaaagtttggttgggagtgatcaattttttatggaagaagagcaatttt 411  Q
    |||||| |||||||||||||| ||||| |||||||| |||| ||||||||||||||    
T  13987382 tattttggaaagtttggttggaagtgagcaatttttgatgggagaagagcaatttt 13987327  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 18838760 - 18838719
Alignment:
Q  355 atattttagaaagtttggttgggagtgatcaattttttatgg 396  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  18838760 atattttcgaaagtttggttgggagtgagcaattttttatgg 18838719  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 28009229 - 28009279
Alignment:
Q  356 tattttagaaagtttggttgggagtgatcaattttttatggaagaagagca 406  Q
    |||||| ||||||||||||||||| || |||||||| |||| |||||||||    
T  28009229 tatttttgaaagtttggttgggagcgagcaatttttgatgggagaagagca 28009279  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 28066532 - 28066582
Alignment:
Q  356 tattttagaaagtttggttgggagtgatcaattttttatggaagaagagca 406  Q
    |||||| ||||||||||||||||| || |||||||| |||| |||||||||    
T  28066532 tatttttgaaagtttggttgggagcgagcaatttttgatgggagaagagca 28066582  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 31588383 - 31588349
Alignment:
Q  356 tattttagaaagtttggttgggagtgatcaatttt 390  Q
    ||||||||||||||||||||||||||| |||||||    
T  31588383 tattttagaaagtttggttgggagtgaacaatttt 31588349  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 4710330 - 4710288
Alignment:
Q  364 aaagtttggttgggagtgatcaattttttatggaagaagagca 406  Q
    |||||||||||||||| || ||||||||||||| |||||||||    
T  4710330 aaagtttggttgggagcgagcaattttttatgggagaagagca 4710288  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 42451878 - 42451828
Alignment:
Q  356 tattttagaaagtttggttgggagtgatcaattttttatggaagaagagca 406  Q
    |||||| |||||||||||||||||  | ||||||||||||| |||||||||    
T  42451878 tattttcgaaagtttggttgggagcaagcaattttttatgggagaagagca 42451828  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 46181301 - 46181245
Alignment:
Q  355 atattttagaaagtttggttgggagtgatcaattttttatggaagaagagcaatttt 411  Q
    ||||||| |||||||| |||| |||||| ||| |||| |||| ||||||||||||||    
T  46181301 atattttcgaaagttttgttgagagtgagcaaattttgatgggagaagagcaatttt 46181245  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 411
Target Start/End: Original strand, 51811808 - 51811852
Alignment:
Q  367 gtttggttgggagtgatcaattttttatggaagaagagcaatttt 411  Q
    |||||| |||||| || ||||||||||||| ||||||||||||||    
T  51811808 gtttggatgggagggagcaattttttatgggagaagagcaatttt 51811852  T

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