View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4001_low_6 (Length: 440)
Name: NF4001_low_6
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 435
Target Start/End: Original strand, 34286545 - 34286966
Alignment:
| Q |
13 |
aatatattaatttgtgtctctgcatgtgtcggtctctcatgataaagaaagaaacaaaagaagaacatgcgtggggatataacggtaggagaaatacttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34286545 |
aatatattaatttgtgtctctgcatgtgtcggtctctcatgataaagaaagaaacaaaagaagaacatgcgtggggatataacggtaggagaaatacttc |
34286644 |
T |
|
| Q |
113 |
tatttatgtnnnnnnnnnntattgttgaattgttttctattgtaagtgtctaaagaaattatattcgggattgtaactacataagtgttcctcgaaatca |
212 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34286645 |
tatttatgtaaaaaaaaattattgttgaattgttttctattgtaagtttctaaagaaattatatccgggattgtaactacataagttttcctcgaaatca |
34286744 |
T |
|
| Q |
213 |
gattcattgcagctacaattttctcgcttttacgcattcaagatattaatgaccgttcaatcttgattagacgatctagaaaaaatatatttagttgtta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| |
|
|
| T |
34286745 |
gattcattgcagctacaattttctcgcttttacgcagttaagatattaatgaccgttcaatctttatcagacaatctagaaaaaatatatttagttgtta |
34286844 |
T |
|
| Q |
313 |
gtttataattcataaaataccgagctttaaggagaatcgtctgatcttgatcgaacgatcacataagaatgattgtgtgattgcatatgtgtcatcttat |
412 |
Q |
| |
|
||||||||||| ||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34286845 |
gtttataattc-taaaatatcaaactttaaggagaatcgtctgatcttgatcgaacgatcacataagaatgattgtgtgattgcatatgtgtcatcttat |
34286943 |
T |
|
| Q |
413 |
tgactaccgatcatgatctatgt |
435 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34286944 |
tgactaccgatcatgatctatgt |
34286966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 54197412 - 54197368
Alignment:
| Q |
272 |
atcttgattagacgatctagaaaaaatatatttagttgttagttt |
316 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| ||||||| |
|
|
| T |
54197412 |
atcttgatcggacgatctagaaaaaatagatttagtttttagttt |
54197368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 21008828 - 21008892
Alignment:
| Q |
302 |
tttagttgttagtttataattcataaaataccgagctttaaggagaatcgtctgatcttgatcga |
366 |
Q |
| |
|
||||||| ||| ||| |||||| ||||||||| ||||||| ||||| ||||| ||||||||||| |
|
|
| T |
21008828 |
tttagttattattttttaattcctaaaataccaggctttaatgagaaccgtctcatcttgatcga |
21008892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University