View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_low_8 (Length: 381)
Name: NF4001_low_8
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_low_8 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 27571121 - 27571482
Alignment:
| Q |
19 |
tgtagtatgtctaccagtggatcaactataccaaaatgcattaacaaacatcaggtctttttcaccaatgcattgttttaccatgtctgttggccattat |
118 |
Q |
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| T |
27571121 |
tgtagtatgtctaccagtggatcaactat-ccaaaatgcattaacaaacatcaggtctttttcaccaatgcattgttttaccatgtctgttggccattat |
27571219 |
T |
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| Q |
119 |
ctcagaaggtagagtatttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacccttgtacctaact |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27571220 |
ctcagaaggtagagtatttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacccttgtacctaact |
27571319 |
T |
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| Q |
219 |
agactctattacaatccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacactattccttgagttctcaaagcaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27571320 |
agactctattacaatccatcaaaatacattcattggttaattggtttgtttgagacccttagcaactatatatacactattccttgagttctcaaagcaa |
27571419 |
T |
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| Q |
319 |
cacaaatcttttccattctgagttataaaaactcaaatatttctttctcatccaatcctctgc |
381 |
Q |
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| T |
27571420 |
cacaaatcttttccattctgagttataaaaactcaaatatttctttctcatccaatcctctgc |
27571482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 132 - 373
Target Start/End: Complemental strand, 27422448 - 27422210
Alignment:
| Q |
132 |
gtatttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactctattaca |
231 |
Q |
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| T |
27422448 |
gtatttgcatgttcttccatttaacttcatctaatccttgaaaatgacttctataagacaataccatgtgatctcttgtccctcactaggccctatcaca |
27422349 |
T |
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| Q |
232 |
atccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacactattccttgagttctcaaagcaacacaaatcttttc |
331 |
Q |
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||||||||||| |||||||| ||||||||||| | || |||||||||||||| ||||||||| || ||| | |||| ||| ||||||| |||||| |
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| T |
27422348 |
gctcatcaaaatactttcattggctaattggtttg-tagagtcccttagcaactatttatacactactctttg-ggtctc-aagtaacacaagtcttttg |
27422252 |
T |
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| Q |
332 |
cattctgagttataaaaactcaaatatttctttctcatccaa |
373 |
Q |
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| T |
27422251 |
catcataaattatcagaattcaaatatttctttctcatccaa |
27422210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 106 - 381
Target Start/End: Complemental strand, 27419621 - 27419350
Alignment:
| Q |
106 |
tgttggccattatctcagaaggtagagtatttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacc |
205 |
Q |
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||||||||||||||||| || || | |||| |||||| |||| ||| |||||| |||||||||||||| | | |||| ||||||||||||||| || |
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| T |
27419621 |
tgttggccattatctcacaatgtggggtatgtgcatgctcttccattaagcttc--ctaatccttgaaaaa-atatgtataggacaataccatgtgatcc |
27419525 |
T |
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| Q |
206 |
cttgtacctaactagactctattacaatccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacactattccttga |
305 |
Q |
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| T |
27419524 |
cttgtccttcacttgaccctatcacagctcaccaaattacattcactgattaattggtttgtag-aggcccttagaaactatatatacattattccttgg |
27419426 |
T |
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| Q |
306 |
gttctcaaagcaacacaaatcttttccattctgagttataaaaactcaaatatttctttctcatccaatcctctgc |
381 |
Q |
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| T |
27419425 |
attctcaaatcaacataaatcttttgcattctgaattataagaattcaaatatttctttctcatccaatcctctgc |
27419350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 127 - 373
Target Start/End: Complemental strand, 27414809 - 27414562
Alignment:
| Q |
127 |
gtagagtatttgcatgttcttatatttagcttcatctaatcctt-gaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactct |
225 |
Q |
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|||| |||| ||||||||||| ||||||||||||||||| || ||||||||| |||||| ||||||||||||||| ||||||| ||| ||||| | || |
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| T |
27414809 |
gtagggtatgtgcatgttcttccatttagcttcatctaatagtttgaaaatgacttctataggacaataccatgtgatcccttgtccctcactaggccct |
27414710 |
T |
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| Q |
226 |
attacaatccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatataca-ctattccttgagttctcaaagcaacacaaa |
324 |
Q |
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|| ||| ||||||||| | | |||||| | |||| ||| | || ||||| ||||||||||||||| |||||| ||| |||||| ||||||||||| |
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| T |
27414709 |
atcacagctcatcaaaatgcttccattggctgattgattttgtagagtcccttggcaactatatatacacctattcattgtgttctc-aagcaacacaag |
27414611 |
T |
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| Q |
325 |
tcttttccattctgagttataaaaactcaaatatttctttctcatccaa |
373 |
Q |
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|||||| ||| || | |||| | || ||||||| |||||||||||||| |
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| T |
27414610 |
tcttttgcatcctaaattatcataattcaaataaatctttctcatccaa |
27414562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 132 - 379
Target Start/End: Original strand, 27566870 - 27567117
Alignment:
| Q |
132 |
gtatttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactctattaca |
231 |
Q |
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|||| ||||||||||| ||||| ||||||||||| |||||||||||| || || | ||||| |||||||| |||| || ||| | ||| | |||| ||| |
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| T |
27566870 |
gtatgtgcatgttcttccatttatcttcatctaatgcttgaaaatgacttccatgatacaatgccatgtgatccctggtccctcagtaggccctatcaca |
27566969 |
T |
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| Q |
232 |
atccatcaaaatacattcattggttaattggtttgtttcagacccttagcaac--tatatatacactattccttgagttctcaaagcaacacaaatcttt |
329 |
Q |
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| T |
27566970 |
gctcatcacaacactttcattggctaagtggtttg-tacaggcccttagcaactatatatatacattattcttttagttctc-aatcaccacaagtcttt |
27567067 |
T |
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| Q |
330 |
tccattctgagttataaaaactcaaatatttctttctcatccaatcctct |
379 |
Q |
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| T |
27567068 |
tgcatcataaatcatcagaattcaaatatttctttctcatccaatcctct |
27567117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 313
Target Start/End: Complemental strand, 27425026 - 27424835
Alignment:
| Q |
132 |
gtatttgcatgttcttatatttagcttcatcta--atccttgaaaatgacctctataagac--------aataccatgtgaacccttgtacctaactaga |
221 |
Q |
| |
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||||||| |||||||| ||||| ||||||||| ||||||||||||||| |||||||||| |||||||||||| ||||||| | | ||||| |
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| T |
27425026 |
gtatttgaatgttcttccatttaacttcatctataatccttgaaaatgacttctataagacaatagtacaataccatgtgatcccttgtccgtcactagg |
27424927 |
T |
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| Q |
222 |
ctctattacaatccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacactattccttgagttctcaa |
313 |
Q |
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| |||| ||| || |||||||| |||||||| |||||| ||| | || ||||||| |||||||||||||||||| || |||||||| |
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| T |
27424926 |
ccctatcacagctcaccaaaatactttcattggctaattgattttgtagagttccttagcttctatatatacactattccatgggttctcaa |
27424835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 27425130 - 27425068
Alignment:
| Q |
25 |
atgtctaccagtggatcaactataccaaaatgcattaacaaacatcaggtctttttcaccaat |
87 |
Q |
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|||||||||| || || | |||||||||||| || ||||||||||||||| | |||||||||| |
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| T |
27425130 |
atgtctaccattgcattagctataccaaaattcaataacaaacatcaggtttctttcaccaat |
27425068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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