View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4001_low_9 (Length: 362)
Name: NF4001_low_9
Description: NF4001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4001_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 47248503 - 47248853
Alignment:
| Q |
1 |
ctatgttcttatctagaccccctaagtcatctcatcacatggaatcaacaaataatattcatgggttagcgtgtgaagtgtttcccatcagataaatttt |
100 |
Q |
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| T |
47248503 |
ctatgttcttatctagaccacctaagtcatcttatcacatggattcagcaaataatattcatgggttagcgtgtgaagtgtttcccatcagataattttt |
47248602 |
T |
|
| Q |
101 |
tgttgagggagatnnnnnnnnnttatgttgagagctatatataagtgaggagatttatatgcttaatattttacgatttatagtgaaaatctgataatat |
200 |
Q |
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| T |
47248603 |
tgttgagggagataaaaaaaa-ttatgttgagaggtatatataagtgaggaaatttatatgcttaatattttacgatttatagtgaaaatctgataatat |
47248701 |
T |
|
| Q |
201 |
ttataggttagcccaatgtgagaattatcaaatgtcttaggttctttgcaacccaattataatgtaatacgatttttaactgccagtgcaatgtgttggc |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47248702 |
ttataggctagcccaatgtgagaattatcaaatgtcttaggttctttgcaacccaattataatgtaatacgatttttaactgccagtgcaatgtgttggc |
47248801 |
T |
|
| Q |
301 |
ttttgcaaattttatgaagattatcgaatgaccatgattgtttacgcctatg |
352 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47248802 |
ttttgcaaattttatgaagattatcgcatgaccatgattgtttacgcctatg |
47248853 |
T |
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